Pseudomonas aeruginosa BWH052, V553_01056
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa BWH052 adTvf-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCGTTCTCCAACTACGCGTCCCTGCACGAGAAAGGCAGCATCGTCCGCGGTACCGTGAAGGAAGTCGACGCCAAGGGCGCTGTCATCAGCCTGGGCGAC GACATCGAAGGTATCCTGAAGGCTTCCGAAATCAGCCGTGACCGCGTCGAAGACGCGCGCAACGTCCTGAAGGAAGGCGAGGAAGTCGAAGCCAAGATCA TCAGCATCGACCGCAAGAGCCGCGTCATCAGCCTCTCCGTCAAGTCCAAGGACGTCGACGACGAGAAGGACGCAATGAAAGAACTGCGTAAGCAGGAAGT AGAAAGCGCTGGTCCGACCACCATCGGTGATCTGATCCGTGCTCAGATGGAGAATCAGGGCTAAGTCTCTGATCCATCATGAAAAAGGGCGGCCTAGGCC GCCCTTTTTCGTTTTCCCCTTCTTGGACCTGTTCAAAGACTGATCAGCATGCTAAAAGAGACCTGAGCTGATCTAGCCGCTTGAAAAAGAAGGGAAAACC
|
|
| DNA Sequence for Gene |
>V553_01056
ATGACCAAGTCGGAGTTGATCGAACGGATCGTTACCCATCAGGGGCAACTGTCCGCGAAGGATGTCGAGTTGGCAATCAAGACCATGCTGGAGCAAATGT CCCAGGCCCTGGCGACCGGGGACCGGATCGAGATCCGTGGTTTCGGCAGCTTTTCCTTGCACTACCGCGCCCCGCGCGTCGGTCGCAACCCCAAGACCGG GGAGTCGGTACGACTCGACGGCAAGTTCGTGCCGCACTTCAAGCCGGGCAAGGAGTTGCGGGATCGGGTCAACGAGCCGGAGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CTCTGGCAGATACGAGGTTTTTTCAATGCAATGGCTCGGGCGGATTTTGACTGCTGTGTTTGTGTTGGTGGTTGCGCTGGTGGTCCTGGTTTTCGTATTG GAAAATCAGAATAGCGTCAGCCTTGCCTTCCTTGGGTGGCACACTCCTGACGGTCCGCTTTCTCTCTTCGTGTCTCTGGCTTTCATCCTCGGTGGGCTCG GTGGGTTGTTGAGTGGGGCATTGCTTCGTTTGAGGGGGCGTCGACAAAAATCTCTTCGCTCTGAATCAACCTCTCTATAAGTTCGTCCCTTCCGAACTAA TTGCGTGCCAGCTCCGCAGTGGGTCTCTTCTTGCTGAAAAGGGTTGCTGCCGGCGGGTCGTAACCTCTCGTGGAAGGTATCCTCTGGCCTGCTTGACCCC ATTTTTCTGCTGTGGGCACTAATCTCTGACTGTCTTGTCTAACATACGTCCGTGCATCCTGAATCGCGAGCTAGGCTCTGTTATCAGCGATTGGTGCGCT
|
|
| Amino Acid Sequence |
>integration host factor subunit beta
MTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRVGRNPKTGESVRLDGKFVPHFKPGKELRDRVNEPE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|