Pseudomonas aeruginosa BWH050, V551_05859
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa BWH050 adTzs-supercont1.8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCGGCCGATATCCGCCTCGTTGCCGTAGATCTGCGCGGTATCGATGGCGCGATAACCCAGCTCGAGGGCGCTGCGCACCGAGTCGACGACGACCTGGC CGGTGAGGCGGAAGGTGCCGAGACCGAAGGACGGGAGGGGGTGGATGGTGGAAGACATGGCTGCGCTCCGTGGGCGGGATGGCTCGAATGAAGCGCAGTG TGGCGGCTTACATCTCTTCGATTAAGACCCGAATCGAGCAAATTCATTTGCGTTGGAATCACGAATCCAGGCGGCCTTCACGGGAGGTATCCAGCGGAAA TTCCTGCCAGCCGCTGGCAGAACGCAGTTCATCGGATTCCCGCGAATAGTACTGATAACGATAATCTCTATCATTTACTCCATTTTTACATTTACATACA CTTGCCCCGCCGCGAATTCCTACGCCGGTTTCCCACATAAACAAGAAACGCAGCCGGTCGCGCCAACGGCCTGCCTGCGCCGCCATCCAGGACACTGCAG
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| DNA Sequence for Gene |
>V551_05859
ATGAAACACGTCGTTTCCAGTGCGTTATTGCTCGGTCTCTCCTCGCTTTCCCTGGCCGCCCAGGCCGCTCCCATCGCCCTTGACCTTCCCGCCCAGCCCC TGGCCGCATCCCTCGAGCAATTGCAGGGCGCCAGCGGCCTGCGCATCCGTTTCGACCGCGCGGCCGTGGCCGACCGGCGCGCACCGGCCCTACGCGGCAC GCTGGAGCCGAGCGAGGCACTGCAGCGTCTGCTCGCAGGTTCCGGACTGAGCGGGGAGGTACGGGGCGGCGACGCCTGGGTCGAGGCCGCTGCGACAGGT GCCGGCATCGCCCCCGGCGACAGCGTCGACCTCGGCGCGCTCAGCGTGGTCGCCACCCAGGACCCGGCCACCGCCGCCATCACCGAAGACAGCGGCTCCT ACACCACCCGGGCGATGCGCACCTCGACCAAGCTGGCGATGTCGATCCGCGAGACCCCTCAGTCGGTCAGCGTGGTCACCCGCCAGCGCATGGACGACCA GGGCATGCGCGACCTAAACGACGCGGTGAAGGGCGTCACCGGCCTCACCGTGCAACAGTACGGGCCGGCCCGGGTGAAGTACGCGGCGCGCGGCTTCGAC GTCGACAACATCATGTACGACGGCCTGCCGACGAGCATTTCCACCTATACCCAGGACGTCATTTCCGCCGCCGACCTGGCCATGTTCGACCGCGTCGAAG TGGTGCGCGGTGCCACCGGCTTGATGCAGGGCGCAGGCAACCCGGCGGCGGCGATCAACATGGTGCGCAAGCGTCCGACCCAGGACTTCCGCGCCTCCCT GCAAGGCAGCGTCGGCACCTGGGACCGCTATCGCAGCGAGGCCGACGTTTCCGGTCCGCTGAACAGCGAAGGAACCCTGCGCGGCCGCGCGGTGGTCGCC TACCAGAAAGGCAACAGTTTCCAGGACCACGTCAGCAGCGAACGCGGCGTGTTCTACGGGATCGCCGAAGCCGACCTGAGCCCGGACACCACCTTCGCCA TCGGCGCCTCGAACCAGAACGACAACCGCAACGACAACTGGGTAGGCCTGCCCAGCCCGCTGGGCGGCCGCCACCTGGACCTCAAGCGCTCGTCCTACTA CGGCGCCGACTGGTCCTACTGGGATACCGACACCACCCACCTGTTCAGCGACCTGACCCACCGCTTCGCCAACGGTTGGCAGATGAAGCTGGCCGCCGAC AAGCTGTGGGCGCGAATCAACATGCTCGGGCTGTACAACGACTGCTACTACTCGACCACCGGCTGCGCCAGCATGACCCAGAACCCCGGCGACTACAGCT ACACCGACGACCACGACAGCTATGACGCCTATGCCAACGGTCCCTTCCAGTTGCTCGGCCGCGAGCACGAGCTGGTGGTCGGCGCCAGCTATCGCCAGGA ACGCTTCGACGGCCACGGCGGCTGGGGCAGCCTGTTCAACAAGGACGGCACCCCGACCGGGCCGATGGACCCGACCCAGTGGGACCCGAGTTCGACCCTC AAGCCGAGGCTGAACACCAGCCTGTGGGGCATGAAGCTCGACCAGGAACAGAAAGGCGCCTACCTCACCACCCGGTTGAACCTCGCCGACCCGCTGAAAG TGATCCTCGGCGGGCGCCTGGACTGGTATAAGGCCGACGCCGATACCGACAGCTACAAGGTCACCCGCAACGTCACCCGCTATGCCGGGGTGATCTACGA CCTGAACCAGACCTACTCGGTCTACGCCAGCTATACCGACATCTTCAAGCCGCAGAGCAACTTCGACGCCGGCGGCGGCCTGCTCGACCCGATCACCGGC AAGAACTACGAGATCGGCCTGAAGGGCGAACACTTCGGCGGCGCGCTCAATTCGCAGATCGCGCTGTTCCAGATCGACCAGGAAAACCGCGCCACCGAGG ACGTCGGCGGCCCCTCGCCATGCCCCTTCAGCCCCACCTCGCGCTATTGCTCGCGCGCTTCGGGCAAGGTCCGCAGCCAGGGCGTCGACCTGGAGCTGAG CGGTGCGCTGAGCGACGACTGGCAGATGATGGCCGGCTATACCTACGTCGACGCCAAGTACAAGCACGACAGCAACAAGGCCAACGAGGGCAAGCCATTC GACGCGGCCAAGCCACGCCACCTGTTCAAGCTCGCCACCAGCTACACGCTACCCGGCGAACTGCACAAATGGCGCGTCGGCGGCGACCTGGCCACCCAGA GCAAGACCGAGGACAGCAGCACCGGTTTCCAGCAGGGCGGCTACACCGTGGTCAACGCCATGCTCGGCTACAAGGTCAGCGAACGGATCGACACACGGCT GAACTTCAACAACCTGTTCGACAAGTACTATTACAGCGGCATCGACTTCGGCAACCTCAACTACGGCGAGCCGCGCAACCTGATGTTCACGGTGAAGTAC TCGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCCGGACCGCCGGCGTGCCTCCGCAGGTGCGGCGGCGGTGTCCGAACGGCCCTTCGAGGCGCCTCAGCAGGGCCGATAGCGGCGCTCGAACTCGCTCGC CAACTGCTCCAGCGTGACGCTCCCCAGGCGCTCCAGGAGCAACGCCTGCGCCGCCTCGAACGCCTCGCCGAGCGCTTCGTTGACCGCCTGCTCGACCAGG CATTCCGGATGATCGGTAGACAGGCCGATGGCGAAGATCGAGGACGCTCCCAGCGCCTGGTGGATATCCAGCAAGGTGATGTCCGCCAGCGGCTTGGCCA GCCGCCAACCGCCGCGATGGCCCTTCTCCGAACTCACGTAGCCTTCGTTCTTCAGCAGCGCCATGGTCCGTCGCACCACCACCGGGTTGGTGCCGAGCAT CTGCCCGATGGCTTCGGAAGTCGCCGGCCCTTCCTGGCGGGCCATATGGATCAGCACATGGAGCATGCGCGAGAGGCGGGTGTCGTTTCTCATGGACGGC
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| Amino Acid Sequence |
>ligand-gated channel
MKHVVSSALLLGLSSLSLAAQAAPIALDLPAQPLAASLEQLQGASGLRIRFDRAAVADRRAPALRGTLEPSEALQRLLAGSGLSGEVRGGDAWVEAAATG AGIAPGDSVDLGALSVVATQDPATAAITEDSGSYTTRAMRTSTKLAMSIRETPQSVSVVTRQRMDDQGMRDLNDAVKGVTGLTVQQYGPARVKYAARGFD VDNIMYDGLPTSISTYTQDVISAADLAMFDRVEVVRGATGLMQGAGNPAAAINMVRKRPTQDFRASLQGSVGTWDRYRSEADVSGPLNSEGTLRGRAVVA YQKGNSFQDHVSSERGVFYGIAEADLSPDTTFAIGASNQNDNRNDNWVGLPSPLGGRHLDLKRSSYYGADWSYWDTDTTHLFSDLTHRFANGWQMKLAAD KLWARINMLGLYNDCYYSTTGCASMTQNPGDYSYTDDHDSYDAYANGPFQLLGREHELVVGASYRQERFDGHGGWGSLFNKDGTPTGPMDPTQWDPSSTL KPRLNTSLWGMKLDQEQKGAYLTTRLNLADPLKVILGGRLDWYKADADTDSYKVTRNVTRYAGVIYDLNQTYSVYASYTDIFKPQSNFDAGGGLLDPITG KNYEIGLKGEHFGGALNSQIALFQIDQENRATEDVGGPSPCPFSPTSRYCSRASGKVRSQGVDLELSGALSDDWQMMAGYTYVDAKYKHDSNKANEGKPF DAAKPRHLFKLATSYTLPGELHKWRVGGDLATQSKTEDSSTGFQQGGYTVVNAMLGYKVSERIDTRLNFNNLFDKYYYSGIDFGNLNYGEPRNLMFTVKY SL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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