Pseudomonas aeruginosa JMM, RLJV_25600 (ruvB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain JMM contig051, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCAGTAGGCGAGCCGGTGACCTTGCATACCCATCTGGTTGTGCGTGAGGATGCGCACTTGCTCTATGGCTTCGCCGAAAAGCGCGAGCGAGAGCTGTTC CGTGAGCTGATCCGGCTCAACGGCGTGGGTCCGAAACTGGCCCTGGCGCTGATGTCGGGCCTGGAAGTGGACGAACTGGTGCGTTGCGTCCAGGCACAGG ACACCTCCACCCTGGTGAAGATCCCCGGTGTTGGCAAGAAGACCGCCGAGCGCCTGCTGGTGGAGTTGAAGGACCGCTTCAAGGCTTGGGAAAACATGCC CACGATTGCACCGTTGGTGATGGAACCCCGTGCCAGCGCTACAGTCTCAAGCGCCGAGGCCGATGCAGTCAGCGCGCTGATCGCCCTCGGCTTCAAGCCA CAGGAAGCCAGTCGTGCCGTCGCAGCCGTACCGGGAGAGGATTTGTCCAGCGAAGAAATGATCCGCCAGGCCCTGAAGGGCATGGTCTAGGTGGCGCCCG
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| DNA Sequence for Gene |
>RLJV_25600
|ruvB
ATGATCGAGCCTGATCGCCTCATATCCGCCGTTTCCGGTCGCGAACGCGATGAGCAGCTGGACCGCGCCATTCGCCCGCTGAAGCTGGCCGACTACATCG GCCAGCCCAGCGTGCGCGAGCAGATGGAGCTGTTCATCCATGCCGCGCGCGGCCGCCAGGAGGCACTCGACCATACGCTGATCTTCGGTCCGCCGGGGCT GGGCAAGACGACCCTGGCGAATATCATCGCCCAGGAAATGGGCGTTTCCATCAAGAGTACTTCCGGGCCGGTGCTCGAGCGTCCCGGCGATCTCGCCGCG TTGCTGACCAACCTGGAGGCCGGCGACGTCCTGTTCGTCGACGAGATCCATCGTCTTTCGCCCATCGTCGAAGAAGTGCTGTATCCGGCCATGGAAGATT TCCAGCTGGACATCATGATCGGCGAAGGGCCTGCGGCCCGTTCCATCAAGCTGGACCTGCCGCCGTTCACCCTGGTCGGCGCGACCACTCGTGCCGGCAT GCTGACCAATCCACTGCGCGATCGCTTCGGTATCGTCCAGCGCCTGGAGTTCTACAACGTCGAGGACCTGGCGACCATCGTCAGTCGGTCGGCCGGCATT CTCGGCCTGGAGATCGAGCCGCAGGGCGCGGCGGAAATCGCCAAGCGCGCCCGCGGTACGCCGCGAATCGCCAATCGCCTGCTGCGCCGGGTACGTGACT TCGCCGAGGTTCGGGGGCAGGGCGACATTACCCGGGTGATCGCCGACAAGGCATTGAACCTGCTCGATGTCGACGAGCGTGGCTTCGACCACCTCGACCG TCGTCTGTTGCTGACCATGATCGACAAGTTCGATGGCGGGCCTGTAGGAATCGACAACTTGGCTGCGGCGTTGAGCGAGGAGCGGCACACGATCGAAGAT GTACTGGAGCCCTATCTGATCCAGCAGGGCTACATCATGCGGACACCGCGGGGACGCGTGGTAACACGCCATGCGTACCTGCACTTTGGCCTGAATATTC CGAAAAGGTTGGGGCCGGGGGTGACGACGGATCTGTTCACGTCTGAAGATGGTAATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGCATTTGTGGGCGATTGCCGATTGGCAAAGCCGGAACTTGGTTCTAGAGTATGCGCGCGCAACACGGGGGAAAGCCGTTCCAGCAGCGTTTCCGGGTC TATTACGAGGACACGGATGCCGGCGGCATCGTCTATTACGTCAACTATCTCAAGTTCATGGAACGGGCTCGGACCGAGCGGCTGCGAGCTTTGGGGTTCG CCCAATCGCAACTGGTCGGCGACAATCTGCTGTTCGTCGTGCACTCCGCCGAGGCGCGTTACCACGCCCCGGCCAAGCTCGACGATGAACTGCTTGTCAG CGCCGAGGTCGAGGAGTTGAACCGGGCGAGCCTGAAGTTTCGTCAACAGGTTCGTCGAGCGTCGGACTCCGTCCTGCTCTGCGAGGGGCGGTTCCTGGTG GCGTGCGTGCGAGCGGACACCCTGAAGCCACGTGCTATCCCCGAAACGTTGCGTGCGGCTTTTGCCGGAAGCCCGGATTCTTTTTCAGCAGGAGATTAAA
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| Amino Acid Sequence |
>Holliday junction DNA helicase RuvB
MIEPDRLISAVSGRERDEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAA LLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGI LGLEIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQGDITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIED VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPKRLGPGVTTDLFTSEDGN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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