Pseudomonas aeruginosa JMM, RLJV_15785
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain JMM contig025, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCTTCAGGCCATTGTCGTATCGGAAAGTGAGGCCAAGCGCATCGAGGAAATCTACAAGCGTCTGGAAGAACAGGACAAAATCAGCAACCCCACCGTCAC TACCCCTCCCGCAGTCGATGCCGGCTCTCGGGTCGATGACGCACTCGCCCATACCGGAACCCGTGTGACCTCTGGAGGAGAAACTGGAGCAACGGGTGGC TCCGGTCGGGATGTTGATACGGGTACTGGACAAGGAGGCATCACGGCGCGCCCGGTCGATGTCGGCAGTGTTTCAATCCCTGACCGGCGTGACCCGAAAA TTCCCGACCAGCCAAGGAGGGATCTTGGCTCGTTGGTTCCTACTTTTCCCGACTTCCCGACGTTCCCTAGCTTTCCGGGCGTCGGTGTACCAGCAGCGGC TAAACCTCTGATTCCAGCAGGTGGCGGTGCTGCGAGCGTTTCCAGGACTCTCAAAACCGCAGTGGATTTGCTTTCGGTGGCCCGCAAGACCCCTGGTGCA
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| DNA Sequence for Gene |
>RLJV_15785
ATGTTGGGTCAGGTAGCCGCTGTCGTCGCCACTATGGCGGTCAGTTCCTTCTGGCCGAAACTGAACAATGGTGAACGGCAGGCCTCCTTTGCCATTCCGG TTGCGGAACTGTCTCCGCCACTGGCGGTTGACTGGCAAGCCATTGCCGCCGCCAAAGGAACGGTGGACCTGCCTTACCGGCTGAAAACCCTCAATGTCGA TGGGTCGATTCAAATCATCGCCGTACCGACCGAGCCGGGTAGTGCGGCGGTCCCCGTCAGGGCGCTGACTCTGGACTCCGCCTCGGGGACCTACAAATAC ACGACTACCGGCCCTGGCGGCGGCACCATCCTAGTCACCCCGGATACTCCACCTGGCCAGATCGATCCGTCGTCTTCGACACCCGCAGTGCCCCGTGGCC CGCTGATCATGCCCGGCACACTGCTGATTCCGAAGGAACCGCAGATCGAGTCCTATCCAGAACTCGACCAACGGGAGTTCAACGACGGCATCTACGTCTA CCCGGAAGACAGCGGTATTCCGCCACTCTATATTGTTTATCGAGATCCGCGAGATGAGCCGGGCGTTGCTACCGGTAATGGCCAGCCGGTCACTGGGAAC TGGCTGGCCGGCGCCTCGCAAGGTGACGGAGTGCCGATTCCGAGCCAAATCGCCGATCAGTTACGCGGTAAGGAATTCAAGAGTTGGCGAGACTTTCGGG AGCAGTTTTGGATGGCCGTTAGCAAAGACCCATCAGCTCTCGAAAACCTCTCCCCCAGTAATAGGTACTTTGTCAGTCAGGGCCTTGCTCCTTATGCTGT GCCAGAGGAGCATCTGGGTAGCAAAGAAAAGTTTGAGATTCACCATGTAGTCCCTCTGGAAAGCGGCGGTGCTCTTTACAATATAGACAATCTTGTTATC GTCACTCCGAAACGCCACAGCGAAATTCATAAAGAACTGAAACTTAAACGTAAGGAGAAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAATGGATATTAAAAATAACCTTTCCGATTATACTGAAAGCGAGTTCCTGGAGATCATTGAAGAGTTCTTCAAGAACAAATCAGGACTAAAGGGTAGTGA GCTAGAGAAGAGAATGGATAAACTGGTCAAGCACTTCGAGGAAGTTACTTCTCACCCACGAAAGAGTGGGGTAATTTTCCATCCGAAACCTGGCTTTGAA ACGCCCGAAGGCATAGTGAAAGAAGTCAAAGAGTGGCGTGCCGCCAACGGCCTCCCTGGCTTCAAGGCTGGCTAATTAGCCACCAACAAGCCCCGTTCCG GCGGGGCTTGTTTTTTGAGAGACTTTCCTTATTTTTCTGGACGCTACTCACTCTAGCCCTGACAAGTCCATTTAATTGGCTTGCAGAGTTTTCGGCGGTT TCGGCTTGCGCCCCAGGCTGAGTCATTGAAGAGCATATTCTCAGGCTCACAGAAACCTTAGCGTAGGATTTTTCCGAATTCTGCGGTTTCCCCTCGTGCA
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| Amino Acid Sequence |
>S-type Pyocin
MLGQVAAVVATMAVSSFWPKLNNGERQASFAIPVAELSPPLAVDWQAIAAAKGTVDLPYRLKTLNVDGSIQIIAVPTEPGSAAVPVRALTLDSASGTYKY TTTGPGGGTILVTPDTPPGQIDPSSSTPAVPRGPLIMPGTLLIPKEPQIESYPELDQREFNDGIYVYPEDSGIPPLYIVYRDPRDEPGVATGNGQPVTGN WLAGASQGDGVPIPSQIADQLRGKEFKSWRDFREQFWMAVSKDPSALENLSPSNRYFVSQGLAPYAVPEEHLGSKEKFEIHHVVPLESGGALYNIDNLVI VTPKRHSEIHKELKLKRKEK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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