Pseudomonas putida BIRD-1, PPUBIRD1_4718
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida BIRD-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTCTGGCACTGCTTGCCACCGGCCTGGCCTTTTGGGCCGTGTACGACGTTATCGCCCAACGGGGCTCGTCCTACCGGCCGGAAATTTTCCATGCCGTTCT CCAGATGATTGCCGCGCACCCTTGGACTGGTCTTGGCCTGGGGGCTGATTACGAGGTGAGCGCCGTCGGCATGCACTTCGATCACACCCACAACATGTTC ACCCATGTTGCCGTTGAAATGGGCTTGCCCGGCATGTTGCTGTGGGTAATGGTGTGGCTGTTCACGCTGGGCGAAATCGTGCGCGCCCGTGGCACCCTGT TCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGCCGCCAGCCTCACCGGTACGCCACGTGCCGAATGGTTCATCAG CTGGCTGCCGGTGGGCCTTGCCATGTTGCTGCCATGGGGGCGTGCCGAAAATGACGCCTGTGGTAAAATTGCCGGTTCAACCTGAACAGCGAGCTCGATA
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| DNA Sequence for Gene |
>PPUBIRD1_4718
ATGGCCGAAACACCGCGACCAGCGGAGCACACCTCCAGCCTGAAGATCTACTTCCGGCTGTTGAGCTATGTGAAACCCTATGTCGGCATTTTCCTGCTGA GCATTGTCGGTTTCGTGATCTTTGCCTCGACCCAGCCAATGCTGGCCGGCATTCTCAAGTACTTCGTCGATGGGCTGAGCAACCCCGAAGCGGTATTGTT CCCCAACGTCCCCTACCTGCGTGACCTGCAATTGCTGCAGGCGGTGCCGCTGCTGATCATCCTGATCGCTGCGTGGCAGGGCCTGGGCTCGTTCCTCGGC AACTACTTCCTGGCCAAGGTCTCTCTGAGCCTGGTGCATGACCTGCGGGTGGCACTGTTCAACAAGCTGCTGGTGTTGCCCAACCGCTATTTCGACAACC ACAACTCCGGGCACCTGATTTCGCGCATTACCTTCAATGTGACCATGGTCACCGGCGCCGCTACCGACGCCATCAAGGTGGTGATCCGCGAAGGCCTGAC CGTGGTGTTCCTGTTTGCCTACCTGCTTTGGATGAACTGGCACCTGACCCTGGTGATGGTCGCCATCTTGCCGGTGATTGCGGTTATGGTCAGCATCGCC AGCAAGAAATTCCGCAAGCAGAGCAAGAAGATCCAGGTAGCCATGGGCGACGTCACCCACGTTGCCTCGGAAACCATCCAGGGTTACCGCGTGGTCCGTA GCTTCGGTGGCGAGGCCTACGAACAGCAGCGATTCGGCCAGGCCAGCCAGAGCAACACCGACAAGCAACTGCGCATGACCAAGACCGGCTCGCTGTACAC GCCGATGCTTCAGCTGGTGATCTACAGCGCCATGGCTGCGCTGATGTTCCTGGTGCTGTTCCTGCGCGGGGACTCCACTGCTGGTGACCTGGTGGCTTAT ATCACCGCTGCCGGCCTGCTGCCCAAGCCGATTCGCCAGTTGTCGGAAGTCAGCTCGACCATCCAGAAGGGCCTGGCAGGTGCCGAGAGCATCTTCGAGC AACTGGACGAAGCGCCTGAAGTGGACACTGGTACGGTCGAGAAGGAACACGTGGAAGGGCGCCTGGAAGTGCGTAACCTGAGCTTCACCTACCCGGGTAC CGAGCGTGAAGTGTTGAGCGATATCAGTTTTGTCGCAGAGCCCGGGCAGATGATCGCCCTGGTCGGCCGCTCCGGCAGTGGCAAGTCTACGCTTGCGGCC CTGATCCCGCGCTTCTATCACCACGACAAGGGGCAGATCCTGCTCGATGGCGTGGAGATCGAGCACTATCGCCTGCGCAACCTGCGTCGCCATGTTTCGC AAGTCACCCAGCATGTCACCCTGTTCAACGACACCGTGGCCAACAACATCGCTTATGGCGATCTGGCCGGTGCGCCGCGCGCAGACATCGAAGCCGCCGC GGCCGATGCCTATGCCAAGGAATTCGTCGACCGGCTGCCAAAGGGCTTCGATACCGAAGTGGGTGAGAACGGTGTACTGCTGTCCGGTGGCCAGCGCCAG CGTCTGGCAATTGCCCGTGCGCTGCTTAAGAACGCGCCGTTGCTGATCCTCGATGAAGCGACTTCGGCGTTGGATACCGAGTCCGAGCGGCATATCCAGG CCGCCTTGGATCACGTGATGCAAGGCCGTACCACGCTGGTGATTGCCCATCGGCTGTCGACCATCGAGAAGGCTGACCAGATCCTGGTCATGGACCAGGG CCGCCTGGTCGAGCGCGGTACTCACACCGAGCTGCTTGCGGCTAATGGCCATTATGCCCGTCTGCATGCCATGGGGCTGGATGAGCCGGCCAAGGCCGAT ATCACCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCCTCCTTGATCGGGGCCGTCATGGCCCCGATTGTCACGGGAATTTTCCAGGGATGATCTGGCCATAAAGCCATTGACTACCCTGTGCTAATATCCTGC CCCTGTTCATTATTTCCATATGGGTTGCCCATGAAGTTGTCCATGCCGCGTTTCGATCAAGCCCCGGTACTGGTGGTCGGCGATGTCATGCTCGACCGCT ACTGGCATGGCGGTACTTCGCGTATTTCGCCTGAAGCGCCAGTCCCGGTGGTCAAGGTCGATCAGATCGAGGATCGCCCCGGCGGCGCGGCCAACGTTGC CTTGAACATTGCTGCGCTGGGCGCGCCGGCTTCGCTGATCGGCGTCACCGGCCAGGATGAGGCTGCCGACAGCCTGGCCAACAGCCTGCAGGCTGCCGGT GTCCGTTCGGTGTTCCAGCGCATCGCGCACCAGCCGACTATCGTCAAGCTGCGGGTCATGAGCCGTCACCAGCAGCTGCTGCGTATCGATTTCGAAGAGC
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| Amino Acid Sequence |
>Lipid A export ATP-binding/permease protein msbA
MAETPRPAEHTSSLKIYFRLLSYVKPYVGIFLLSIVGFVIFASTQPMLAGILKYFVDGLSNPEAVLFPNVPYLRDLQLLQAVPLLIILIAAWQGLGSFLG NYFLAKVSLSLVHDLRVALFNKLLVLPNRYFDNHNSGHLISRITFNVTMVTGAATDAIKVVIREGLTVVFLFAYLLWMNWHLTLVMVAILPVIAVMVSIA SKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEQQRFGQASQSNTDKQLRMTKTGSLYTPMLQLVIYSAMAALMFLVLFLRGDSTAGDLVAY ITAAGLLPKPIRQLSEVSSTIQKGLAGAESIFEQLDEAPEVDTGTVEKEHVEGRLEVRNLSFTYPGTEREVLSDISFVAEPGQMIALVGRSGSGKSTLAA LIPRFYHHDKGQILLDGVEIEHYRLRNLRRHVSQVTQHVTLFNDTVANNIAYGDLAGAPRADIEAAAADAYAKEFVDRLPKGFDTEVGENGVLLSGGQRQ RLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMQGRTTLVIAHRLSTIEKADQILVMDQGRLVERGTHTELLAANGHYARLHAMGLDEPAKAD IT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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