Pseudomonas putida BIRD-1, PPUBIRD1_4617 (cobL)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009236 cobalamin biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02467
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008168 methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.1010.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008276 protein methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02467
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb00860 Porphyrin and chlorophyll metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG ppb01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53790 Tetrapyrrole methylase IPR035996 Tetrapyrrole methylase superfamily 4 204 6.02E-37
PIRSF PIRSF036428 CobL_MTase IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase 1 401 0.0
CDD cd11644 Precorrin-6Y-MT IPR012818 Precorrin-6Y methyltransferase 8 204 1.68339E-59
Gene3D G3DSA:3.40.1010.10 - IPR014777 Tetrapyrrole methylase, subdomain 1 4 101 1.3E-9
NCBIfam TIGR02469 JCVI: precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit 230 351 1.8E-34
PANTHER PTHR43182 COBALT-PRECORRIN-6B C(15)-METHYLTRANSFERASE (DECARBOXYLATING) - - 3 400 5.1E-120
Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IPR000878 Tetrapyrrole methylase 5 188 4.0E-16
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 214 376 1.31E-25
CDD cd02440 AdoMet_MTases - - 252 346 0.00152457
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 212 402 1.3E-60
NCBIfam TIGR02467 JCVI: precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE IPR012818 Precorrin-6Y methyltransferase 7 200 1.6E-42

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.