Pseudomonas putida BIRD-1, PPUBIRD1_4567 (hemL)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida BIRD-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTGAAGCCGAAGGGCTGATGAAGCTCTGCGAGCGTTACGGCACCCAGTTGCTGATCAACGACGACGCCGAACTGGCCGCCCGCCTGGGTGTCGGCGTG CACCTGGGCCAGACCGACGGCCCGCTGACCCCGGCCCGCGCATTGCTCGGCCGTCAGGCAATCATCGGTTCCACCTGCCACGCCAGCCTCGAACTGGCCA CCCAGGCTGCCAGCGAAGGCGCCAGCTACGTGGCCTTTGGCCGCTTCTTCAATTCTGTCACCAAGCCGGGCGCGCCCGCTGCCAACGTCGGCCTGCTCGA GCAGGCCCGCGCCCAGGTGAAACTGCCGATCGCCGTGATCGGCGGCATCACCCTCGACAACGCCGCGCCGTTGGTCGCCCACGGCGCCGACCTGCTGGCG GTGATCCACGGCTTGTTCGGTGCCGACAGCGCGCAGGAAGTCACCCGCCGCGCCCGCGCCTTCAACGCCTTGTTCGCATCCTGATTCGAGAGATACTTCC
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| DNA Sequence for Gene |
>PPUBIRD1_4567
|hemL
ATGTCCCGTTCCGAAGCCCTGTTCGCCCAAGCCCAGAAGCACATCCCTGGCGGCGTCAACTCGCCGGTCCGCGCTTTCAAGAGCGTTGGCGGCACGCCGC TGTTCTTCAAGCATGCCGAAGGCGCCTATGTCGTTGACGAGGACGACAAACGCTACGTCGACTACGTCGGCTCCTGGGGCCCGATGATCCTCGGCCACGG CCACCCGGACGTGCTGGACTCGGTACGCAAGCAGCTGGAGCACGGCCTGTCCTACGGCGCGCCCACCGCCATGGAAACCGAGATGGCCGACCTGGTCTGC TCGATCGTACCGTCGATGGAAATGGTGCGCATGGTCAGCTCGGGCACTGAAGCCACCATGAGCGCCATCCGCCTGGCCCGTGGCTACACTGGCCGTGACG CCATCATCAAGTTCGAAGGCTGCTACCACGGCCACTCCGACAGCCTGCTGGTAAAAGCCGGCTCCGGCTTGCTGACCCAAGGCGTGCCAAGCTCGGCAGG CGTGCCAGCGGACTTCGCCAAGCACACCCTGACCCTGCCGTTCAACGACATCGCCGCCGTCGAGAAGACCCTGGCTGAAGTTGGCCAGACCGTGGCCTGC ATCATCGTGGAGCCGGTGGCCGGCAACATGAACTGCGTACCACCGGCACCGGGCTTCCTCGAGGGCCTGCGCGAGCAATGCGACAAGCATGGCGTGGTGC TGATCTTCGACGAAGTGATGACCGGTTTCCGCGTCTCGCTCGGCGGCGCCCAGGGCCATTACGGCATCAAGCCGGACCTGTCGACCTTCGGCAAGATCGT CGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGC AATCCGCTGGCCATGGCCGCTGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATGCTTGACG GCCTGCAGCAACGCGCCGACGCCGCTGGTGTGCCATTCGTCACCACCCAGGCCGGTGCCATGTTCGGCCTGTACTTCAGCGGCGCCGACGATATCGTCAC CTTCGAAGACGTGATGGCCAGCGATGCCGAGCGCTTCAAGCGCTTCTTCCACCTGATGCTCGACGGTGGCGTGTACCTGGCACCGAGCGCATTCGAAGCG GGCTTCACCTCCATCGCCCATGGCGACAAGGAGCTGCAGATCACCTTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGCCAGCCTGTACCGGCCTCTTCGTGAGCAAACCCACTCCTACACTCATGAAAGCGGCACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCA CAGGCAATAATTACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCCCATAATGTGCC ACCAGAGACATTGGCCGCAGCTTTGCAGAGGTAAGTCGATCCCCATGAACCGCACCGGCCGCGCCCTGACCCTGGGCTGCCTGTTGCTTCTTCAGCCCCT GCTGGCCCTGGCGGAGGGCGGTAACTCGTTGCTGATTCCGGCGGCGGGCCGCTGCACCTTGAACGTTCAGCCTGAAGACCTGGCAAACGCCCTCAAGGCC TGCGAGCAGACGGCGACTGCGGGGGATGCCCAGGCGCAATTCGAACTGGGCGAGTATTACTACACGCAAACGCCAAAAAACCTGGGCAAAGCCCTGGACT
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| Amino Acid Sequence |
>HemL
MSRSEALFAQAQKHIPGGVNSPVRAFKSVGGTPLFFKHAEGAYVVDEDDKRYVDYVGSWGPMILGHGHPDVLDSVRKQLEHGLSYGAPTAMETEMADLVC SIVPSMEMVRMVSSGTEATMSAIRLARGYTGRDAIIKFEGCYHGHSDSLLVKAGSGLLTQGVPSSAGVPADFAKHTLTLPFNDIAAVEKTLAEVGQTVAC IIVEPVAGNMNCVPPAPGFLEGLREQCDKHGVVLIFDEVMTGFRVSLGGAQGHYGIKPDLSTFGKIVGGGMPVGCFGGKREIMGCIAPLGPVYQAGTLSG NPLAMAAGLTTLKLISRPGFHAELTDYTSRMLDGLQQRADAAGVPFVTTQAGAMFGLYFSGADDIVTFEDVMASDAERFKRFFHLMLDGGVYLAPSAFEA GFTSIAHGDKELQITLDAAEKAFAALK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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