Pseudomonas putida BIRD-1, PPUBIRD1_4126 (algY)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006508	proteolysis	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00834	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0004252	serine-type endopeptidase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00834	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005515	protein binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF13180	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppb01503	Cationic antimicrobial peptide (CAMP) resistance	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb02020	Two-component system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF13180	PDZ domain	IPR001478	PDZ domain	379	459	3.4E-9
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	100	112	5.9E-53
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	161	185	5.9E-53
SUPERFAMILY	SSF50494	Trypsin-like serine proteases	IPR009003	Peptidase S1, PA clan	4	272	8.43E-70
Gene3D	G3DSA:2.40.10.120	-	-	-	21	256	2.2E-86
Gene3D	G3DSA:2.30.42.10	-	IPR036034	PDZ superfamily	261	360	3.5E-27
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	303	315	5.9E-53
NCBIfam	TIGR02037	JCVI: Do family serine endopeptidase	IPR011782	Peptidase S1C, Do	23	463	0.0
Pfam	PF13365	Trypsin-like peptidase domain	-	-	91	224	4.3E-35
Pfam	PF02163	Peptidase family M50	IPR008915	Peptidase M50	232	355	2.6E-9
SUPERFAMILY	SSF50156	PDZ domain-like	IPR036034	PDZ superfamily	378	465	1.31E-14
CDD	cd00987	PDZ_serine_protease	-	-	263	352	1.45531E-25
SMART	SM00228	pdz_new	IPR001478	PDZ domain	263	345	3.6E-15
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	217	234	5.9E-53
SUPERFAMILY	SSF50156	PDZ domain-like	IPR036034	PDZ superfamily	234	359	1.04E-22
Gene3D	G3DSA:2.30.42.10	-	IPR036034	PDZ superfamily	373	467	6.6E-18
SMART	SM00228	pdz_new	IPR001478	PDZ domain	377	456	7.2E-10
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	195	212	5.9E-53
FunFam	G3DSA:2.40.10.120:FF:000007	Periplasmic serine endoprotease DegP-like	-	-	22	256	6.7E-102
PANTHER	PTHR22939	SERINE PROTEASE FAMILY S1C HTRA-RELATED	-	-	377	460	3.1E-97
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	121	141	5.9E-53
CDD	cd00987	PDZ_serine_protease	-	-	378	463	1.70259E-17
Pfam	PF13180	PDZ domain	IPR001478	PDZ domain	265	354	1.4E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.