Pseudomonas putida BIRD-1, PPUBIRD1_4109
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida BIRD-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTCGCTGGGCAAGCAGCCCAAGGGCGCCAAGGAACGCGAAGGCGACAAGAAAACCCCTGAGGGCTTGTACTGGCTGGACTGGCGCAAGCAGAGCGACCGC TTCAACCTGGCCATGCACATCAATTACCCGAACATCAGCGATGCCGCCCGCGCGACCCGGGCAGGCGTGAATGCCGGCAGCATGATCATGATTCACGGCA CACCGATCAATGATGAATACCCGGAGTGGTACTTCCATACCCTGGACTGGACGGATGGTTGCATTGCCATGCGCAACCGCGACATGCAGGAAGTGTGGGA CCTGGTTCGGGATGGAACGCTGATCGAGATCCGCCCTTGAAATAGAGCCTTCCGGCAAAAGTTGTAGGAACCTTCTCACCAATTAGCGCGAATTTGCCTG ACAGGTGCTTAGGCAGGGTACTGCATCCATACGAGTGGCTTAATTTCTAGCATCCACGCAGACGAGTACGAAAACCGTACATCATTTGCGGGGTGCTTCA
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| DNA Sequence for Gene |
>PPUBIRD1_4109
ATGCCGTGCCTGATTCACCGCATCGCCCATTGGCTGTCGGCCGGTTGCCTTTCTGGCTTGCTGTCCGCTCCCCAGGTACTGGCCGACGACCCTGCCAGCC AGCAGCTGCGCGATCAACAGCATGGGCTGCGGCAGCTGGAGCAACAGCAGCGGCTGGAACGCTGGCAGCGTATACCCGTCCCGGCTGAACCGACCAACAG CACTTCCCTCCGCCCGCACGACGATCACTGCTGGGCAGTCGATGGCGTGCGCGTGGCGGGCATGCACCGGCTTTCGAACTCGGCACTTGCGCCCACCATC CGTGCGCTCACGCCTGCCTGCATGGGTATCGCCGACATCAACCGGCTGCTCAAAGCCATCACCCAACGTTATGTACAAGCCGGCTACCCAACCAGCCGCC CCTACCTGCGGCAGCCCCCAGCAGAGGGCATGCCGTTGGACATCGTCATTGTCGAAGGCTTTGTCGAAACCATCGAACTGGCAGGCCCCGACCTGCCCCT GTCTCTCTCCAGTGCCTTCCCAGGCCTGCTTGGGCAGCCACTGTACCTGCCCGACCTTGAGCAAGGCCTGGACCAGCTCAACCGCCTTCGCGCCTATGAA CTGGGCGCCACCTTGCTGCCCGGCGAACTGCAGGGCGGCACCCGCGTGGTCGTGCAGCCGGGCAAGGTTGCATCACGCTGGCACCTGGACACCGGCAACA ACAGGGCAGTCAATTACTGGGCACTGACAGCGTGCTGCTGCAGTCCGGCGACGACTTACGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCAGCGAAGGTGGACGCCGGTAACGAGCTGACGGTCGACAGCGGTGCCGGCCTGGACATCCTCGCCGGCATCGACAGCAAACGCACCGAACAGAAGGT GCGTCATCGCAAGGATTTATGGCGCGGTGACAGCGATAGCGACCAACTCAAGGAAACCGCAAAGGGCAGTACCCTGAGCGCCGGGCACATGTCGATAGAG GCAAGCGACAACCTCAACGTAAAGGGCAGCAGCCTGCACAGCCGCGGCGATCTGGCTATCCAGGCAAAACAGGCCGACATCGGCACCACCACCTTGCAGG AACACGGTACCCAACGCGACTACCGAGGCGATCTGGTGTCCGGCACATTTTTTGGTGACCGCAAAGGTAACGACACCGAGGGCCAGGTCGTTGCAGGCAG CACCATAACCAGCGATGGCGAGCTCACTGTGAGCGCCGACCAGGTCGCCATCAAAGGCAGCACCGTGTTCGGTAAACAGGACGCGGTGCTCTACAGCGAT
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| Amino Acid Sequence |
>TPS family activation/secretion protein
MPCLIHRIAHWLSAGCLSGLLSAPQVLADDPASQQLRDQQHGLRQLEQQQRLERWQRIPVPAEPTNSTSLRPHDDHCWAVDGVRVAGMHRLSNSALAPTI RALTPACMGIADINRLLKAITQRYVQAGYPTSRPYLRQPPAEGMPLDIVIVEGFVETIELAGPDLPLSLSSAFPGLLGQPLYLPDLEQGLDQLNRLRAYE LGATLLPGELQGGTRVVVQPGKVASRWHLDTGNNRAVNYWALTACCCSPATTYA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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