Pseudomonas putida BIRD-1, PPUBIRD1_3661

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0000160	phosphorelay signal transduction system	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00448	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00421	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF46894	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppb02020	Two-component system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF52172	CheY-like	IPR011006	CheY-like superfamily	3	134	2.7E-22
SMART	SM00448	REC_2	IPR001789	Signal transduction response regulator, receiver domain	4	121	1.8E-13
Gene3D	G3DSA:3.40.50.2300	-	-	-	4	213	7.9E-42
Pfam	PF00196	Bacterial regulatory proteins, luxR family	IPR000792	Transcription regulator LuxR, C-terminal	153	206	5.2E-13
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	184	196	1.8E-6
SUPERFAMILY	SSF46894	C-terminal effector domain of the bipartite response regulators	IPR016032	Signal transduction response regulator, C-terminal effector	145	213	4.42E-16
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	154	168	1.8E-6
CDD	cd06170	LuxR_C_like	IPR000792	Transcription regulator LuxR, C-terminal	154	207	1.28046E-14
CDD	cd17535	REC_NarL-like	-	-	6	126	1.87902E-28
SMART	SM00421	luxrmega5	IPR000792	Transcription regulator LuxR, C-terminal	151	208	9.4E-11
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	168	184	1.8E-6
PANTHER	PTHR43214	TWO-COMPONENT RESPONSE REGULATOR	IPR039420	Transcriptional regulatory protein WalR-like	3	207	7.4E-34
Pfam	PF00072	Response regulator receiver domain	IPR001789	Signal transduction response regulator, receiver domain	6	121	7.6E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.