Pseudomonas putida BIRD-1, PPUBIRD1_3488
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida BIRD-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTCATGACCACGCGCCTCATGTTCGAGCTCAAGCGCAGCAGAATGCGTGAGTTCAAGCCGTCTGAAGTGCTCAGCCACATCAACCGCGGCCTGATCAACA GCAAGCTGGGCAAGCACGTCACCATGGTCGGCGGGGTAATCGACGAAGAGTCCGGCCTGCTGACCTACGCTGTCGGCGGCCATTTGCCGTTGCCGGTACT GTACACCCCCGAGCATTGCCGCTACCTGGAAGGCCGCGGCCTGCCGGTGGGGTTGTTCGATGAGGCCACCTACCAGGACCTGGTGGTGGAGCTGCCCCCG CAGTTCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATCGTCAAGGCAG CAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCGCCCTATTGGTGTTGAGCAGGAACCTTCA
|
|
| DNA Sequence for Gene |
>PPUBIRD1_3488
ATGAGTACCGGTAGAATTCAGTTCGCCGAGCAGAGCGGTACCTTCGTACTGAAATTCGTTGGTGAAGTGCGCCTGACCCTGTGTTCGGCGCTGGATGCGA CGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGACCTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAA GCTGTCGATCCTGTCACGGCAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGACATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAG GTGTTCAACATCGTCGATCGGCCGATACCCTGCACCGATTGCCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGG AGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTTATAGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGATCTTAACCCTCCGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGG CTGTAAAAATTCTGAATCTCACTGCTCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCTCGCATCCAGCTGATACACGCGCGCTGGCCGCCCCTGTTCA TCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAACCGTTCCCCCGCCTTGCTATGGTTCGGCGTGCGCGGCACCACTTCCATCTCCCGCCGCTTGG TAAACCAGTTCAGGGGTGAACGCGGCGCATACAGCCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAACGGCGGGGAAACTCGTTCTTGATTCCGCTGCT GGTCACCTGCCACAAGTGCGGGCTGCGCTGGCGGTGGCGAATCAGCACCTCATACACGAACGAGTAATGCACATCCCCCGACAGCACCACGTAGTGCCCC
|
|
| Amino Acid Sequence |
>anti-sigma-factor antagonist
MSTGRIQFAEQSGTFVLKFVGEVRLTLCSALDATIEKIFTALNFSAIVIDLTETESIDSTTLGLLAKLSILSRQKVGLLPTVVTTNPDISRLLQSMGFDQ VFNIVDRPIPCTDCLTDLPSQDQNEDVVRSKVLEAHKILMGLNDSNREAFHDLVNALERS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|