Pseudomonas putida BIRD-1, PPUBIRD1_3161
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida BIRD-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCGCCGACAACGTCGAGGCCTGCCCACGTAACGGCGAATGCTTTTCCACCGCCACACAGTCGTGCAGCACCGTCGCCGCAAGCAAGATTTCAAGGTCGCC ACCCTCTACCCGCTGGATCCGGTGCGCATTGACCCACACGCGATGAATGTGGGCCAAGTCGTGGGAGCCATCACTCTGGTCGGACGGCAAGTACTTCAGC AAGTCAGTGGCAAGGCACTGATAAGGGGCAAACGCTTGGCGGGTCATCTTCGGTAGGTTCCATTTCCGGTGAATGCGCGGGCTCACGGGCGCCGTCCGGA CACTGCCTGGGCAAGTACCGAGAGCCTGCATGTCGGTTTCAAAGCCTGTACAACACTGGCAGGAGCAGCCTTGTGCTGCGATGAGGATGTTACTGCCAAA GTAGATCCTCAGCCCTATCAGCACCTTGCTACTAAGTATTTCCGTCAACAACACGTTTGTTACTGGGAGCACTTGTATTCGATCAGCAAGGAGTCAATGG
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| DNA Sequence for Gene |
>PPUBIRD1_3161
ATGTCCGCTCGCTTTTCCTCCCCCGCCACCCGTATTCGCCAAACCGCGCTAGCGGTCAGCTTCGCGGGCTCGCTGCTGGGCACTGCACATGCCTGGGCCG AGCCTGTGGGTTACAGCATCCCGGCAGGGTCATTGGCTCACGCACTCGACCAGTTTGCCGACGCCAGCGGGGCAGTCATCAGTTTCAGCCATGAAGAAGT CGCAGGCTTGCACAGCAAAGGGCTGCACGGCAATTACGCGCTGCATCAGGCGTTGGCAGAGCTGCTGCAAGGCAGTGGCTTGCAGGTGCAGGCAGCGGGC GACAAGCACTTCATGCTGGTTAGCGCTGAGCAGGATGGCGCCATGGAGCTTGCGGCCACCACCGTCTCCAGCATGGCTCTGGGTGCCACCACCGAAGGCA CCGGCAGCTACACCACCGGCTCGGTCAATACCGCAACCGGGCTGCGGCTGTCGGCACGCGAGACACCCCAATCGGTCAGCGTGGTCACCCGCCAGCAGAT TGAAGACCAGAACCTGAACGATGTTACCCAGGTGCTTGAACAGACACCGGGCGTGGTCGTTGACAGCATGGGGCCCGCCGGAAGCGACGCCAACCATATC TACGTGCGCGGCTTCGAGGTCGGCAGCATCCAGGTGGACGGCATCAACCGCCCCGATACCTTTGGCTTCAGGGACGACCTCTCCGACATGGTGTCTTACG ACCGGGTAGAGGTGGTGCGCGGTGCCACGGGCCTGATGTCCGGCACCGGCGACCCGGGCGCCACCGTCAACCTGATCCGCAAGAAGCCGACCCTGGAAAC ACAACGCAAGCTGACCTTGAAAGCGGGCTCGTGGGACAACTACCGCACCGAACTGGACGTTTCTGGCAAGTTGACGCAAAGCGGCAATGTCCGCGGGCGC TTTGTCGCCTCCAATACCGACAGCCAGAGCTACGTCGACCGCCAGTCGCTGGAACGGCAGGTGGCCTATGGGGTGCTGGAGTGGGACATCACCGACAGCA CGATGCTGACAGCAGGTGCGGAATATCAGGAGATGGACAACGACGGGGCAGGCAACCACGGCTTCCCGATGTTCAATTCAGATGGCAGTCACTTCAGCCC CTCCCGCGCGTTCAATTCGGCTTCGGACTGGAGTTATCACAAGCGTCGCACCAAGACGGTATTCACTACGCTGGAGCATCAACTGGACAACGGCTGGCAA TTGAAACTGAATGCCGAACACAGCCGTCGCAGCTATGACGACGCCTTCGCCACCGCTGCCAGCGGCACCGTCAAGCCCGATGGCAGTGGCATCAGCACCT GGACGGGGCGTTGGGCCGGCGAGCCCCGGCAGACCTCGTTCGACCTGTCGGCGTCGGGCCCGTTCGAGCTGTTGTCACGCGAGCACCAGGCCTACCTCGG GGCCAGTCACTACCGCGCCTACTACCGCAACAACGGTTACCCGCTGTGGACGATCCAGACCATCGACAACATTTACACTTGGGACGGTTCGCTGGCGATA CCGGACGCCATCCATGCCAAGTCCTCGGAAGACGCGCTGGATGAAACCCAGGACGGCCTGGTGGCTTCGGTACGCTGGAGCCTGGCCGATGACCTGTCGC TGATTACCGGGGCGCGGCTGATCGACTGGAAACGCGACGAAACCTCTACCACCCTGTCGTCCGGCGCTACAAGCCGCACCTCGCGTAGCGAAACCGGGGT AGTCACGCCCTACCTTGGCCTGGTGTATGACCTCAACGAGAACTGGTCGGCCTATGCCAGTTACACCACCATTTTCAAACCGCAGAGCAACAAGGATATC AACGGTACCTACCTGGACCCGTTGGAAGGCGTGAACTACGAGCTCGGTCTGAAGAGTGAGTTCTGGGACCAGCGCCTGACCACGGCTTTCAGCGTATTCG AGGTGCACCAGGACAACCTGGCGGTAGCCGACGGAAGCAACCTGGCGCCAGACGGCAACCAGGCCTACCGTGCCGAGTCGGGTACCAAGACACGTGGTTT CGAGATGGAAATGGCGGGCGAGATTTTGCCTGATTGGCAGGTCTCGGCCAGCTACACCTATGCGGTGAGCAAGGATTCGGATGGCGACCGCCTGAACACT GAAATACCGCGAGACACCTTGAAACTGTTCACCAGCTACCGCCTGGCGACCCTGCCACAGTTAAAGGTAGGGGGTGGTGTGCGCTGGCAGGGTACCGAAT ATTACAAGAGCGCCGGGCCCAACAACGAAACGTTCACCCAGGACCCCTACAGCGTGGTCGACCTGATGGCTCAGTATGCCTTCACGCCGCAGACCAGCGT TTCACTGAACCTCAACAACGTGTTGGACAAAACCTACTACACGGCGATTGGCGCGCGCGGCTGGTATGGCAGCCCACGCAGCGCCACGGCCACGTTGGTG TACGCGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCGCCAAGGCGACGCCTGATGGCCCCTGAGTTCGCAGATCAGAACACCGACCATCCGATCCGCGAACTGAGCAGCTCAAGCGCCGCCATCCCGGCCAGG GAGTTGCCCGCAGCATTCAGCTCTGGCGACCATACGCATACGGTAAATTGCCCCGGTACGATCGCCACGATCCCGCCACCCACGCCACTCTTGCCAGGCA AACCCACCCTGAAGGCGAAATTCCCCGCCTCGTCATACAGCCCACTGGTGGCCATGATCGAGTTCACTTGTTGGGTCTGGCGCCGCGTCAGGATCTGCTC ACCGCTGTGCTTGCAGAACCCGTCATTGGCCAGGAAGCAGAATGCCCGCGCCAGGTCCAGGCAGTTCATTTGCAGTGCGCAGTAACTGAAGTAACTGCGC AGCACCGTCTCGACCTCGTTATGGAAGTTGCCAAATGACTGCATCAGGTACGCCATGGCAGCGTTGCGCGCGCGAAACTGATATTCCGAATCAGCGACCC
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| Amino Acid Sequence |
>TonB-dependent siderophore receptor
MSARFSSPATRIRQTALAVSFAGSLLGTAHAWAEPVGYSIPAGSLAHALDQFADASGAVISFSHEEVAGLHSKGLHGNYALHQALAELLQGSGLQVQAAG DKHFMLVSAEQDGAMELAATTVSSMALGATTEGTGSYTTGSVNTATGLRLSARETPQSVSVVTRQQIEDQNLNDVTQVLEQTPGVVVDSMGPAGSDANHI YVRGFEVGSIQVDGINRPDTFGFRDDLSDMVSYDRVEVVRGATGLMSGTGDPGATVNLIRKKPTLETQRKLTLKAGSWDNYRTELDVSGKLTQSGNVRGR FVASNTDSQSYVDRQSLERQVAYGVLEWDITDSTMLTAGAEYQEMDNDGAGNHGFPMFNSDGSHFSPSRAFNSASDWSYHKRRTKTVFTTLEHQLDNGWQ LKLNAEHSRRSYDDAFATAASGTVKPDGSGISTWTGRWAGEPRQTSFDLSASGPFELLSREHQAYLGASHYRAYYRNNGYPLWTIQTIDNIYTWDGSLAI PDAIHAKSSEDALDETQDGLVASVRWSLADDLSLITGARLIDWKRDETSTTLSSGATSRTSRSETGVVTPYLGLVYDLNENWSAYASYTTIFKPQSNKDI NGTYLDPLEGVNYELGLKSEFWDQRLTTAFSVFEVHQDNLAVADGSNLAPDGNQAYRAESGTKTRGFEMEMAGEILPDWQVSASYTYAVSKDSDGDRLNT EIPRDTLKLFTSYRLATLPQLKVGGGVRWQGTEYYKSAGPNNETFTQDPYSVVDLMAQYAFTPQTSVSLNLNNVLDKTYYTAIGARGWYGSPRSATATLV YAF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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