Pseudomonas putida BIRD-1, PPUBIRD1_2896
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida BIRD-1
GCF_000183645.1|latest |
| Locus Tag |
PPUBIRD1_2896
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 3252864 - 3254513 (- strand) |
Cross-References
| RefSeq | YP_005930713.1 |
| GI | 386012436 |
| Entrez | 12521077 |
| NCBI Locus Tag | PPUBIRD1_2896 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
VRR-NUC domain-containing protein
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -2.28 |
| Kyte-Doolittle Hydrophobicity Value | -0.249 |
| Molecular Weight (kDa) | 63179.9 |
| Isoelectric Point (pI) | 6.75 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 34 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG003538 (532 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_2896
Search term: VRR-NUC domain-containing protein
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
3.3e-20
Percent Identity:
35.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
3.3e-20
Percent Identity:
35.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
3.3e-20
Percent Identity:
35.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
3.3e-20
Percent Identity:
35.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
3.3e-20
Percent Identity:
35.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
3.3e-20
Percent Identity:
35.4
|
References
No references are associated with this feature.