Pseudomonas putida BIRD-1, PPUBIRD1_2515 (ligD)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003910	DNA ligase (ATP) activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006310	DNA recombination	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppb03450	Non-homologous end-joining	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
NCBIfam	TIGR02776	JCVI: DNA ligase D	IPR014143	DNA ligase D	228	816	0.0
Pfam	PF13298	DNA polymerase Ligase (LigD)	IPR014144	DNA ligase D, 3'-phosphoesterase domain	38	141	6.6E-40
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	23	-
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	IPR012340	Nucleic acid-binding, OB-fold	402	520	3.26E-28
PANTHER	PTHR42705	BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD	-	-	248	829	6.1E-105
SUPERFAMILY	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain	-	-	209	400	1.89E-44
Gene3D	G3DSA:3.30.470.30	DNA ligase/mRNA capping enzyme	-	-	241	356	5.0E-45
NCBIfam	TIGR02778	JCVI: non-homologous end-joining DNA ligase, polymerase domain	IPR014145	DNA ligase D, polymerase domain	547	788	4.1E-87
Pfam	PF01068	ATP dependent DNA ligase domain	IPR012310	DNA ligase, ATP-dependent, central	217	399	2.7E-27
CDD	cd04862	PaeLigD_Pol_like	IPR033651	LigD polymerase domain, PaeLigD-type	563	787	4.13904E-113
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	29	-
Pfam	PF04679	ATP dependent DNA ligase C terminal region	IPR012309	DNA ligase, ATP-dependent, C-terminal	418	514	1.4E-22
Gene3D	G3DSA:3.30.1490.70	-	-	-	230	397	5.0E-45
NCBIfam	TIGR02779	JCVI: non-homologous end-joining DNA ligase, ligase domain	IPR014146	DNA ligase D, ligase domain	219	520	3.7E-112
Gene3D	G3DSA:2.40.50.140	-	IPR012340	Nucleic acid-binding, OB-fold	401	522	3.1E-35
CDD	cd07971	OBF_DNA_ligase_LigD	-	-	402	519	1.10748E-51
CDD	cd07906	Adenylation_DNA_ligase_LigD_LigC	-	-	217	400	1.14783E-83
NCBIfam	TIGR02777	JCVI: DNA ligase D, 3'-phosphoesterase domain	IPR014144	DNA ligase D, 3'-phosphoesterase domain	5	160	1.3E-74
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	186	210	-
Gene3D	G3DSA:3.90.920.10	DNA primase, PRIM domain	-	-	553	833	3.9E-96

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.