Pseudomonas putida BIRD-1, PPUBIRD1_2045
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida BIRD-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGGTGCGTGTATTTTTTCCGAGCGTATCTGGCAAGTGATTGCCGAGCCAGGCAAGGGCCGTTGCTTCACCCACGGTTTTACCTACAGCGGCCACCCGG TGTGCTGCACGGCGGCGCTGAAGAACATCGAGATCATCGAGCGCGAGCACCTGCTCGATCATGTCAAGGACGTGGGGGGTTACCTTGAGCAACGCTTGCA GAGCCTGCGCGATCTGCCGCTGGTGGGGGATGTGCGCTGCATGAAGCTGATGGCCTGTGTCGAGTTCGTCGCCAACAAGGCCAGCAAGGCACTGTTCGCC GATGAGGTGAACATCGGCGAGCGCATCCACAGCAAAGCGCAGGAAAAAGGGTTGCTGGTGCGCCCGATCATGCACCTGAACGTGATGTCGCCACCATTGA TCATCACCCATGCGCAGGTGGACGAGATCGTCGAGACCCTGCGCCAGTGCATCCTCGAAACCGCGCGTGAACTCACGGCGCTTGGCCTGTACCAAGGCCG
|
|
| DNA Sequence for Gene |
>PPUBIRD1_2045
ATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGG GCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGCGCCCTGGCCCATGGCGAAACCGCCGAGGCGCTGGAGTATGTGGCCGCAGCCATCGGCCAGTTGGT GCGGGTGGAGTCGATGATGATCAGCCTTGAGTGCCAGGGGCGGGCGCCGCAGTTGCTGTACCAGCAAGGCATTCCCGAACGGCATCGGGCTGCCGTGCTG GAGCGCTATTTCAGCGCCGGCTACCTGCTGGACCCTTTCTGCCTTGCCGTGCAAAGCGGCCTGGCCGAAGGCTTCTACCACCTGCAGGAAATCGCCCCCG ACAACTTCTTCGACAGCGACTACTACAAGGCCTATTACCTGGGTACAGGTTGCAGTGAAGACAGCTACTACATCGTCGACATCAGCGCAGGCCGCAAGCT GTCGCTGAGCCTGTTCCAGGGCTGCAGCGGCACGCGTCTGAACGCCGGGCAGGTCGACCTGTTGCGTGCGCTGGAGCCGATGGTGCGCGAACTGCTGGTG CGCTATGCCCGGCACAACCTGGAACCGGGCACTGCATCAACCGAGCGCGGCAGCCTGCAGGCAGCGTTCGACAGCTTTGGCTGCCAGGTGCTGACCGACC GCGAGCGGGAAGTGGCGCACATGATCCTGCGCGGGCACTCGGTGAAATCTACTGCGCAGGAGCTTGGTATCTCGCCGGAGACCGTGCGCATGCACCGCAA GAACCTGTACATGAAGCTTGGTATCAACTCGCAATCGGAGTTGTTTGCACGGTTTATCGACTGGTTACGCGGTGATCAGCTGGAAATCCATAGCGTAACG CGGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACAATACCCAATGGCTGACGTACATGCCGTCGGGCGTTTCCCAAGGCGCACCGGCAGCGACTACACAGCACCAACCCGCTCGAAGGACAATGGCATCTTC TTCGCTGCTCAGCCCTCGCGGAACAATGTCCGGCTGAGGGCCTTTCTTGGCTACTTGGAGTCACTCGTCGCCTGCCCTGGCTAGTGGCGCTATAGTGGCT AAGCTGAGCGTTCAGCACTCTGCTCAACTGAGCAATCTGGTGCGCAATTACAAGGACGAAGTCATGGACGCTGAAAGGGATAGCAGAAACATTACCGGTG TCATTCGGGCCTACGGCGGGAGCGCGTTGTCGTTGTCTCCCGGTCAAAATGCCGGGGTACAAAGCCCGGGCATCTATGTGATCTATTTTGTCACGGACAG CAGGCAGGGCACTTGTCTCCCCTTCTACTGCGGGTTCACTTCGCGCTCAATCAGGCAAAGGCTTTATGAACACTCCCAGCCTGGTGGCCAGATCTACAAA
|
|
| Amino Acid Sequence |
>LuxR family transcriptional regulator
MNLAQRAVRGRAWQARLPGMTQASPDTPLTLTMGALQQWHVALQRALAHGETAEALEYVAAAIGQLVRVESMMISLECQGRAPQLLYQQGIPERHRAAVL ERYFSAGYLLDPFCLAVQSGLAEGFYHLQEIAPDNFFDSDYYKAYYLGTGCSEDSYYIVDISAGRKLSLSLFQGCSGTRLNAGQVDLLRALEPMVRELLV RYARHNLEPGTASTERGSLQAAFDSFGCQVLTDREREVAHMILRGHSVKSTAQELGISPETVRMHRKNLYMKLGINSQSELFARFIDWLRGDQLEIHSVT R
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|