Pseudomonas putida BIRD-1, PPUBIRD1_1811 (lolA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida BIRD-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CAGGGTGGTGCCGAACAACTGCTGGGCCACGGCGACATGCTGTACATGCCGCCGGGCACCAGCCTGCCGATCCGCGTGCATGGCGCTTTCGTTTCCGACG ATGAGGTGCACCGCACGGTTGAAGCGTGGAAGCTGCGTGGCGCCCCGGACTACAACGACGACATCCTCAACGGCGTCGAAGAAGCCGGTAGCGGCTTTGA TGGCGGCGGCGGTGGTGGCGAGGGTGACGATGCCGAAACCGACGCCCTGTATGATGAAGCGGTGCAATTCGTGCTTGAGAGCCGTCGCGCCTCCATTTCT GCCGTGCAACGCAAGCTGAAGATCGGCTACAACCGTGCCGCGCGCATGATCGAGTCGATGGAGATGGCCGGCGTTGTCACCCCGATGAACAGCAACGGCT CGCGGGAAGTGATAGCCCCGGGCGGCCCGCGCGACTGATGAACACCCTGCCGGGCGCCAACGGTGGCGCCCGGCCTTTTCAACGCTCAATGAGGATTCCC
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| DNA Sequence for Gene |
>PPUBIRD1_1811
|lolA
ATGCGCGCGATTCGCATGCTGTTGGTTTCTGCCCTGACCCTGGGCTCGGTTACTGCTTTTGCCGGTGAGCAAGACGTACAACGCCTGACCCAGTTGCTGG AAAAGTCGCAGACCATCGAGGCCAACTTCTCCCAGCTGACCCTGGGCGCCGATGGCACCAGCCTGCAGGAAACCTCGGGCAAGATGACGGTCAAGCGCCC GGGCCTGTTCTACTGGCACACCGATGCGCCGCAGGAGCAGGTGGTGGTGTCGGACGGCAAGAACGTCACCCTGTGGGACCCGGACCTGGAACAGGCCACC ATCAAGAAGCTCGACGTGCGCCTGAACCAGACCCCGGCCCTGTTGCTGTCCGGTGACGTGTCGAAGATCAGCCAGAGCTTTGATATCGCGTCCAAGGAGC AGGGCGAAGTAATGGACTTCACCCTCAAGCCAAAGACCAAGGACACCTTGTTCGACTCGCTGCGCGTGTCGTTCCGCAAAGGCCTGATCAATGACATGCA GCTGATCGACAGCGTTGGCCAGCGCACCAACATACTGTTCAATGGCGTCAAGGCCAACCAGGCGGTGCCGGACAGCAAGTTCAAGTTCGACATCCCCAAG GGCGCGGACGTGATCAAGGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCAGAGCTCGCCATGGACCTGTTTCGAAGCGAACCCGTCGCCCAGCCCCTGGCCGCCCGTCTGCGCCCGTCCAGCCTGGATGAGTACGTCGGCCAGGAGC ACCTGCTGGCGCGCGGCAAACCGCTGCGCGAAGCGCTGGAACAAGGTGCGCTGCACTCGATGATCTTCTGGGGGCCGCCCGGGGTCGGCAAGACCACGCT GGCGCGGTTGCTGGCGCAGTTCTGCGATGCGCACTTCGAAACGGTGTCGGCGGTGCTGGCCGGGGTGAAAGAGATCCGCCAGGCCGTGGAGGTGGCCAAA CAGCAGGCTGGCCAATATGGCCGTCGCACCATCCTGTTCGTTGACGAGGTGCACCGCTTCAACAAGTCGCAGCAGGACGCCTTTTTGCCCTATGTCGAGG ACGGCACGCTGCTGTTCATCGGTGCCACCACCGAAAACCCGTCGTTCGAGCTGAACAACGCGCTGCTGTCGCGGGCGCGGGTGTATGTGCTCAAGAGCCT
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| Amino Acid Sequence |
>LolA protein
MRAIRMLLVSALTLGSVTAFAGEQDVQRLTQLLEKSQTIEANFSQLTLGADGTSLQETSGKMTVKRPGLFYWHTDAPQEQVVVSDGKNVTLWDPDLEQAT IKKLDVRLNQTPALLLSGDVSKISQSFDIASKEQGEVMDFTLKPKTKDTLFDSLRVSFRKGLINDMQLIDSVGQRTNILFNGVKANQAVPDSKFKFDIPK GADVIKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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