Pseudomonas putida BIRD-1, PPUBIRD1_1473
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppb00520 | Amino sugar and nucleotide sugar metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd00616 | AHBA_syn | IPR000653 | DegT/DnrJ/EryC1/StrS aminotransferase | 48 | 433 | 0.0 |
| PIRSF | PIRSF000390 | PLP_StrS | IPR000653 | DegT/DnrJ/EryC1/StrS aminotransferase | 19 | 439 | 2.0E-117 |
| SUPERFAMILY | SSF53383 | PLP-dependent transferases | IPR015424 | Pyridoxal phosphate-dependent transferase | 37 | 436 | 1.46E-102 |
| Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase, domain 1 | IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | 309 | 438 | 4.2E-46 |
| FunFam | G3DSA:3.40.640.10:FF:000079 | LPS biosynthesis protein | - | - | 5 | 308 | 0.0 |
| PANTHER | PTHR30244 | TRANSAMINASE | IPR000653 | DegT/DnrJ/EryC1/StrS aminotransferase | 37 | 433 | 1.3E-94 |
| Coils | Coil | Coil | - | - | 6 | 26 | - |
| Pfam | PF01041 | DegT/DnrJ/EryC1/StrS aminotransferase family | IPR000653 | DegT/DnrJ/EryC1/StrS aminotransferase | 46 | 431 | 3.9E-112 |
| Gene3D | G3DSA:3.40.640.10 | - | IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | 5 | 308 | 6.2E-105 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.