Pseudomonas putida BIRD-1, PPUBIRD1_1109
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida BIRD-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGCCACCATAACCGACGCTGACGGGGGGACTTGGGTTGTGGCGTCTCGGCCGGAGGTATCTCGGGTGCTTCCGTTCTGCTTGGTTCCGATTGCCACAG TGCGCCCATAATCTTCTATCCGGCCAAGTATTTTCGTCTTGCTTGTCTGAAGCTTAGACGTTGAGTGGATAGGGTGAAAAATTTGTAAGAAGAAGGAAAA AGTCATGTGGGGCTATGCGGCTTTGGTGTGGGTTCCTTCAACGGACGATGTTGCTATGGTGCCTTGGCGATTCGTGGGGCACGTTGAGGCCCCAGAGTTC TAGCCAAATTTCAGCACATATACAGTGAAAACACCTACAACGGTCTTCCTATACTGCTCGCCCCCTTCGCCCTGCCGGGCGCTCTAGTCCGGCACATGGG CCGGCCCACAAGGCCAGCCTGGCAAGCCAACGCCACGCCTATCGGCATGGTCGCGGCTGCACGAAGGTCAAATCCAATAACAAAATGAGGTTGTATTGCT
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| DNA Sequence for Gene |
>PPUBIRD1_1109
ATGCCAGTCGGCAACCACTCTGCCCACGGCCAGGCCACTGAAGGCGGCCCGCTCAAGCGTGAACTGGGCGAACGGCACATCCGCCTGATGGCGCTGGGCG CCTGTATCGGTGTCGGTCTTTTCCTCGGTTCGGCCAAGGCGATCGAAATGGCCGGTCCGGCCATCATGTTGTCCTACATCATCGGCGGCCTGGCCATCCT GGTGATCATGCGCGCCCTTGGTGAAATGGCCGTGCACAACCCTGTCGCCGGCTCGTTCAGCCGTTATGCCCAGGATTACCTCGGCCCATTGGCGGGCTTC CTGACCGGCTGGAACTACTGGTTCCTGTGGCTGGTGACCTGTGTTGCCGAAATCACGGCAGTGGCCATCTACATGGGCATCTGGTTCCCCGACGTTCCGC GCTGGATCTGGGCCCTGGCGGCGCTGGGCAGCATGGGCGCGGTCAACCTGGTGGCGGTGAAGGCTTTTGGTGAATTCGAGTTCTGGTTCGCGCTGATCAA GATCGTCACCATCATCGCCATGGTGCTTGGCGGCATCGGCATCATTGCCTTCGGCTTTGGCAATGACGGTGTGGCAGTGGGGATCTCCAACCTGTGGAGC AACGGCGGCTTCATGCCCAATGGTGTGACCGGCGTGCTGATGTCGCTGCAGATGGTGATGTTCGCTTACCTGGGCGTGGAAATGATCGGCCTCACCGCCG GTGAAGCACGCAACCCGCAAAAGACCATTCCCCAGGCCATCGGCTCGGTGTTCTGGCGCATCCTGCTGTTCTACGTCGGCGCGTTGTTCGTGATCCTGTC GATTTACCCGTGGAACGAAATCGGTAGCCAGGGCAGCCCGTTCGTCATGACCTTCGAGCGCCTCGGCATCAAGACCGCCGCCGGCATCATCAACTTCGTG GTCATCACCGCGGCGCTTTCGTCGTGCAACGGCGGCATCTTCAGCACCGGGCGCATGCTCTATAGCCTGGCACAGAACGGCCAGGCCCCGGCGGCCTTCG CCCGCACCTCGAAGAACGGCGTGCCACGCAATGCGCTGCTGCTGTCGATCGGCGCGTTGCTGCTGGGCGTGCTGGCCAACTACCTGGTGCCAGAAAAAGT CTTCGTCTGGGTGACCTCGATCGCCACCTTCGGTGCGATCTGGACCTGGGTGATGATCTTGCTGGCGCAGTTGAAGTTCCGTGCCGGCCTTACCACTGCC GAGCGCAAGGCACTGAAGTACCGCATGTGGCTGTGGCCGCTGAGCTCGTATCTGGCACTGGCCTTCCTGGTGCTGGTGGTGGGGCTGATGGCGTACTTCG AGGATACGCGTGTGGCCCTGTACATCGGCCCGGCGTTCCTGGTGTTGCTGACAGTGCTGTATTACACGTTCCGCCTGGCGCCGAAAGACGCACAAGGTGT GACGAGTACAGCCTCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTGACGTGGGGCCGCTTTGCGGCCCCAGCGTTCTCTCAGGCCGCCACTTCGCTGTGCGGCTCGAAACTGTCCGCCCGGGCCAGTTGCCACATCCGCGAA TAGAACTGCCCGTTCACCTCGCCGGTCAGCAGCTCACCTGGCTTCAAGAACACATGCATCTGCGAGAACAGCTTGATTTCGGTGGCCGAAATGCGCCGCA CCAGGTGCTTGGCCTCCAGTTGTGCCGGATGCTCCAGGCCTGCCGCCGCCAGCATTTCTGCCAAGGCACGCAACGTGTTGTGATGGAAGTTCAGCACCCG CTGGGCTTTGTCGGGCACCACCAGCGCGCGCTGGCGCAGCGGATCTTGCGTGGCCACGCCGGTCGGGCACTTGTTGGTGTGGCAGCTTTGCGACTGGATG CAGCCGATGGCGAACATGAAGCCGCGTGCCGAGTTGGCCCAGTCGGCGCCAATGGCCAGCACGCTGGCGATGTCGAAGGCGCTGACAATCTTGCCGCTGG
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| Amino Acid Sequence |
>Amino acid permease-associated region
MPVGNHSAHGQATEGGPLKRELGERHIRLMALGACIGVGLFLGSAKAIEMAGPAIMLSYIIGGLAILVIMRALGEMAVHNPVAGSFSRYAQDYLGPLAGF LTGWNYWFLWLVTCVAEITAVAIYMGIWFPDVPRWIWALAALGSMGAVNLVAVKAFGEFEFWFALIKIVTIIAMVLGGIGIIAFGFGNDGVAVGISNLWS NGGFMPNGVTGVLMSLQMVMFAYLGVEMIGLTAGEARNPQKTIPQAIGSVFWRILLFYVGALFVILSIYPWNEIGSQGSPFVMTFERLGIKTAAGIINFV VITAALSSCNGGIFSTGRMLYSLAQNGQAPAAFARTSKNGVPRNALLLSIGALLLGVLANYLVPEKVFVWVTSIATFGAIWTWVMILLAQLKFRAGLTTA ERKALKYRMWLWPLSSYLALAFLVLVVGLMAYFEDTRVALYIGPAFLVLLTVLYYTFRLAPKDAQGVTSTAS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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