Pseudomonas sp. BRG-100, JH25_RS04915
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. BRG-100 scaffold00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTAGGCCTGATGCAACCGTGGCGTTTTATCCGCATCAGCGACCGCTCATTGCGCAGGCAGATTCAACAGTTGGTGGAAGAAGAGCGCGCGCGCACCGCGC AGGCCCTGGGCGAGCGCTCCGATGACTTCATGAAGCTCAAGGTCGAAGGCATCAGCGACTGCGCCGAGGTGCTGGTGGCTGCACTGATGGATGATCGCGA GCGCCACATCTTCGGGCGCCGCACCTTGCCGGAAATGGACATGGCGTCTCTATCTTGCGCAATCCAGAACCTGTGGCTGGCGGCGCGCGTGGAAGGCCTG GGCATGGGCTGGGTGTCGCTGTTCGAACCCCTGGCGTTGGCCGAACTGCTGGGCTTGCCAGCCGGCGCGAAACCCCTGGCCATACTGTGCCTGGGGCCGG TGGCTGAGTTCTACCCGGCACCGATGTTGCAGCTCGAAGGCTGGACCGAGCCGCGGCCGCTGAGTGACATGCTGTATGAAAACAAGTGGGGAGTGAGTCA
|
|
| DNA Sequence for Gene |
>JH25_RS04915
ATGAGTGTGGCCTTGCTGTGTGTCGCTGCGGTGGCGCTGGATGCGCTGCTGGGTGAACCCAGGCGCTGGCATCCGCTGGTGGCGTTCGGCAACTTCGCCG GGCGCATCGAGCAGCGTTTCAATAGCGGTGGGCGTGGCTGGCGCAGCCATGGCGTGACCGCGTGGTTTATCGCAGTAGTGCCCCTGACCTTGCTGGCCAC CGCGTTATCGTGGGCGCCATATATCGGCTGGCTCCTGGAAATCCTGGCGTTGTACTGCGCCTTGGGCATGCGCAGCCTGGGCGAGCATGTGACGCCGGTG GCCCAGGCCCTGCGCAGCGATGATCTGGATGAGGCACGCAAACGCGTGAGTTACCTGGTCAGTCGCCAGACCAGCGAACTGGACCGCACCGAAGTTGCGC GCGCCGCAACCGAGTCGGTGCTGGAGAACGGCAGCGATGCGGTATTCGCCGCGTTGTTCTGGTTTGTGGTGGCAGGCGTGCCAGGCGTGGTGCTTTATCG CCTGAGCAACACCCTCGACGCCATGTGGGGCTATCGCAACGAGCGCTTTGAGCGTTTTGGCTGGGCGGCTGCAAAGATCGACGATGTGCTCAACTACATT CCTGCGCGGCTGGTGGCCTTGACCTACGCGCTATTGGGCAAAACCCGCCTGTCTCTCAAATGCTGGCGCACCCAGGGCCCGACGTGGGACAGCCCTAACG CCGGTCCGGTGATGGCTGCCGGTGCCGGTGCGTTGGGCGTCGAACTCGGTGGCGCAGCGATTTATCACGGCGAGGTGCATCAGCGCCCGCAGTTGGGCGA AGGCCCGCCGGCCGATGCCGACTCCATTGATCGTGGCTGGCACCTGGTGCAGCGCGGCGTATGGTTGTGGCTGCTGGTCTTGTGCGTAGGGGCGCAAATC TATGCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACACGGTGGTCGGCTGCGAAAGGCCGCGATTGAATACGGGATTGCCGAAGCGGATTGGCTTGATCTCTCCAGTGGCCTGGCGCCCTGGCCGTGGCCGATT CCCGAGATCCCGCTGCGTGCCTGGGCCCGCTTGCCGGAAACCGATGACGGCCTGGAGAAGGCCGCCTGCGAGTATTACGGCGCCGCCCAGTTGTTACCGG TGCCGGGCTCCCAGGCCGCGATCCAGTTACTGCCGCGCCTGCGCCGCTCCGGCAAGGTCGGCGTGCTTTCGCCTTGCTATGCCGAGCACGCCGAAGCCTG GCGCCGCGCCGGTTATGTGGTGCGTGAAGTGCAGGAGCAGGAGGTCGACTTCTTTCTCGACAGCCTCGATGTGCTGGTGGTGGTCAACCCCAACAACCCC ACGGGCCTGAGCCTGCCCCCGCAACGCTTGCTGGACTGGCACGCGCGGCTGGTCCAGCGCGGGGGCTGGCTGGTGGTGGACGAAGCGTTCATGGACGTGA
|
|
| Amino Acid Sequence |
>cobalamin biosynthesis protein CobD
MSVALLCVAAVALDALLGEPRRWHPLVAFGNFAGRIEQRFNSGGRGWRSHGVTAWFIAVVPLTLLATALSWAPYIGWLLEILALYCALGMRSLGEHVTPV AQALRSDDLDEARKRVSYLVSRQTSELDRTEVARAATESVLENGSDAVFAALFWFVVAGVPGVVLYRLSNTLDAMWGYRNERFERFGWAAAKIDDVLNYI PARLVALTYALLGKTRLSLKCWRTQGPTWDSPNAGPVMAAGAGALGVELGGAAIYHGEVHQRPQLGEGPPADADSIDRGWHLVQRGVWLWLLVLCVGAQI YA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|