Pseudomonas sp. BRG-100, JH25_RS05360

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. BRG-100 scaffold00001, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCAGTGTGATCTGCCGCGATGCCGGCGGCTTCAAGGGCCCTGCGCTGTTGCAGAACATCCTTGAGAGCGGCCTGCGCTTTGGCGAGATGGATATATTCCA CCGTCACGAGAGCATGGCCGGTAATGGCGAAGTGCTGTTCTCCATGGCCAATGCGGTCAAACCCGGCACTTTCGATCTGGACGATATCGACCTGTTCAGC ACCCCGGCGGTGAGTTTCTTCCTCGGTTTGCCAGGCCCGCGTCACCCCAAGCAAGCGTTTGATGTGATGGTGGCCGCAGCTCGCAAGCTGTCCCAGGAAT TGAACGGCGAGCTCAAGGACGACCAGCGCAGCGTCCTGACCGCCCAGACCATCGAGCATTATCGTCAGCGCATCGTCGAGTTCGAGCGTCGTGCCCTGAC ACAGAAACGCTGAGGTTCGATCATAAGCGTTGTCTGTAGAATCCATGCACTAACATATTGAGCAGCTTCGGCTGCTCTTTTGCTTTATGAGAGAACACCC
DNA Sequence for Gene
>JH25_RS05360
ATGACCGCCGCCCACACCCGCATTCTCGAACTGCGCGCTGAACTGGATCAGCACAACTATCGCTACCACGTGCTTGACGAGCCGAGCATTCCGGACGCCG AGTACGATCGCTTGTACCACGAGCTCAAGGCCCTGGAAGCCGAGCATCCGGAGCTGGTGACGCGTGATTCACCGACACAGCGGGTCGGCAGTGCGGCGCT GTCGGCATTCACCCAGGTCAAGCATGAGATCCCGATGCTCAGCCTGGGCAACGCCTTTGATGAAACCACCATGCTGGAGTTTGATCGCCGGGTGACCGAG GGCCTCGACCTGCCGGTAGGCGATCTGTTTGGCGCGGGTGCGGCAGTGGAGTACAGCTGCGAGCCAAAGCTCGATGGCCTGGCGGTCAGCCTGCTGTATC AGGACGGCGAACTGGTACGCGGCGCTACCCGGGGTGACGGCACTACCGGTGAGGACATCAGCGTCAACGTGCGCACCGTGCGCAATATTCCGCTCAAGCT GCACGGCAGCGGCTGGCCGGCTACTCTGGAAGTCCGTGGCGAAGTGTTCATGTCCAAGGCCGGGTTCGAACGCCTGAATGCCTCGCAGCTGGAAGTTGGC GGCAAGACCTTCGCCAACCCGCGCAACGCCGCGGCGGGCAGCCTGCGCCAACTGGACTCGAAGATCACTGCCAGCCGCCCGCTGGAATTCTGCTGCTATG GCATCGGCCAGGTGACCGCGGATATCAGCGATACCCATATCGGCAACCTCAAGCAGTTGCAGAAGTGGGGCATGCCGATCAGCCACGAACTGAAGTTGGC CAAGGGTATCCAGGAGTGCCTGGACTACTACCGCGACATTGGCGAGCGCCGTAATTCGCTGGGCTATGAAATCGACGGCGTGGTGTTCAAGGTCAACAGC ATCGCGTCCCAGCGTGAACTGGGCTTCCGCGCCCGCGAGCCGCGTTGGGCGATTGCGCATAAATTTCCGGCGATGGAAGAGCTGACCGAGTTGCTCGACG TGGAATTCCAGGTTGGCCGCACCGGTGCTGTGACCCCGGTGGCGCGCTTGAAGCCGGTCAAGGTGGCTGGCGTGACGGTGTCCAACGCGACCCTGCACAA CATGGACGAAGTGGCGCGCCTGGGGCTGATGATCGGTGACACGGTGATCATCCGCCGCGCCGGTGATGTGATTCCGCAGGTGGTCTCGGTGGTCACCGAG CGTCGCCCGGAGCACGCCCGTGCGGTGCAGATCCCCGAGAACTGCCCGGTGTGCGGCTCCCATGTGGAGCGCACGCAACTGGTCAAGCGCAGCAAAGGCA AGGAAACCGTCAGCGAAGGCGCGGTGTACCGTTGCGTCGGGCGCCTGGCCTGTGGCGCGCAGCTCAAGCAGGCGATCATCCATTTCGTCTCGCGGCGTGC CATGGACATCGACGGCCTGGGCGACAAGACCATCGAGCAATTGGTGGATGAGAAACTCATCGGTTCGCCGGCAGACCTCTACAAGCTCAAGTACGAACAG ATCATCGACCTGGAAGGCTTTGCCGATATCTCCAGCAAGAAGCTGATCAGCGCCATCGAAAACAGCAAGACCCCGACCCTGGCGCGTTTTATCTACGCCC TGGGTATTCCCGATGTGGGCGAAGAGACCGCCAAGGTGCTGGCACGCTCGCTGGCGTCCCTGGAGCGTGTGCAGAAGGCTTTGCCTGAAGTGCTGACCTA CTTGCCCGACGTCGGCCTGGAAGTGGCGCACGAGATTCATAGCTTCTTTGAAGACAGCCATAACCAGGATGTGATCGGTGCACTGTTGTCGCCGGACGAA TGCGGCCTGCAATTGCAGGAGCAAGGCGAACTCAGCGCAGAATTCGCCGCCAGCACCACCTTGGGCGGCTTGCTCGACAAGCTGCATGTACCTTCCGTCG GGCCGGGAGCTGCGCAGAAACTGGCAGACAAGTTCGGTTCGCTGGAAGGCGTGATCAAGGCCGATTGGCTGGATATGCGCCAGGCCCTGCCCGAGAAGCA AGCCAAGGCCGTGCGCGAATTCTTCGACAACCCTGACAACGCCCATCATGCCCTGGCCATCGAGCAGCAGCTCAAGGACTTCGGCATGCACTGGCAGAGC GAGAAAAAGGTCGTTGAAGGCTTGCCCGAAGCCGGGCACACCTGGGTACTCACCGGCTCCCTGGAGTTGATGAGCCGCGACGTCGCCAAGGACAAGCTCG AAAGCCTGGGCGCCAAGGTGGCCGGTTCCGTCTCGGCGAAAACCCACTGCGTGGTCGCCGGGCCGGGAGCCGGTTCCAAATTGGCCAAGGCCAGCGAGCT GGGCCTTAAAGTGCTGGATGAGGAGGCCTTCGTCGCCTTCCTGGCCAGCCACAACATCAGCGTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCTCTTCCTGTGGCGAGGGAGCTTGCTCCCGTCGGGCTGCGCAGCAGCCCCTCAAGAAAGCGGAACGATCTCGAGCGAGAAATGATCTAGTCTCTGTCAC CCCAGGGAGAGCCCGCCATGTTCCGTTACTTCGAGCAACTCAGTTCGCGCATCGCCGCCCCGTTCATGGCTCAAACCTCGCGCAACAGCAAGGTGTGGCA ATGCCGCTGCGGCCAGTCTTTATTCTTTCGCAACAGCCAATGCCTGGCCTGCCAGGCGGTGCTGGGTTATCTGCCGCAGCAAAGCCGTTTGTCTTCCCTG CAACCCGGCCCTGTCGTTGACACTTGGCTGGCGGATGACGCACTCGATGCCGGGGCCTGGCGTCGCTGTGCCAACCTCGACTCACCGGCCGCGTGCAACT GGCTGATCCCCGCCCACACCACTGCGTCGCTGTGCGTGGCCTGTAGCCTGAATCGCACTATTCCTGATCTATCCATCCCGGAAAACCCCGAACGCTGGCG
Amino Acid Sequence
>NAD-dependent DNA ligase LigA
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLYHELKALEAEHPELVTRDSPTQRVGSAALSAFTQVKHEIPMLSLGNAFDETTMLEFDRRVTE GLDLPVGDLFGAGAAVEYSCEPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPATLEVRGEVFMSKAGFERLNASQLEVG GKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGIGQVTADISDTHIGNLKQLQKWGMPISHELKLAKGIQECLDYYRDIGERRNSLGYEIDGVVFKVNS IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVSVVTE RRPEHARAVQIPENCPVCGSHVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVDEKLIGSPADLYKLKYEQ IIDLEGFADISSKKLISAIENSKTPTLARFIYALGIPDVGEETAKVLARSLASLERVQKALPEVLTYLPDVGLEVAHEIHSFFEDSHNQDVIGALLSPDE CGLQLQEQGELSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFGSLEGVIKADWLDMRQALPEKQAKAVREFFDNPDNAHHALAIEQQLKDFGMHWQS EKKVVEGLPEAGHTWVLTGSLELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEEAFVAFLASHNISV
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site