Pseudomonas sp. BRG-100, JH25_RS0127315
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. BRG-100 scaffold00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGGCTGCATCATAGAGAACATCAAGGGGAGCTTGGGTGTCGATCACCAGCGCGGGGATGGTTGAATCGTGGCCTGTCAGGGGGATGTATCGGGTCATTT TCAAACTCTCTACTTAAGTGATTGATGCCACCACTCAAACGTCGCCAAACGAATGGGTGACAGCTGTACGCAGGTTGGCGAACCGGCAGTAGAGAAAACC GGCAGACCCGAAGGTCTCCCGCGCACAGCCGTCATAAGACGACTTTGCAGGCGCGCAAGTGGCTGCAAAAAAGCCATCAGCTTGCGCATTCTCTACCGTC AGGTCGCCAAACCTGAATCGCCATGTGGGCGACCGGCGGACTATAAGCCTGCGGCATGAAAGGGTGCAAGTCGCCAAGCTGTCCTTGTAACAACTCTAAG TGGTCGTAGCGAGAAAACCCTCGACTACACCGCCGTGCAAGAACGCGGTTTCAACCTCGACGGCCAGCCAATCAGCGGTGCAGTCAACGGCCAGGGCCCA
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| DNA Sequence for Gene |
>JH25_RS0127315
CTGGCTTTGGACAGCCGCGCGCCCTCGATCACCCGCGTGCAAGGCCTGCCGGAAATCGCCCCGGTGGATAACAGCCACAAATACCTCATCGAAACCAACC CGGCGCTCACCGACCTCAAGCAATTCATGAGCTCCGACTACCTGCTCGGCAAACTCGGCTATAACCCCGACGCCAGCTGGAAGCGCCTGGGCGACGGTCT GTACGAGCAGCGCCTGATCCGCGAAGCCGTGGTGGCCCGCACCGGCCAGCGCTACATCAACGGCCTCGCCAGCGATGACCAACTGTTCCGCTACCTGATG GACAACGCCATCTCCTACAAGGATTCGCTCAACCTGCAACTGGGCGTGTCCCTCACTGCCGAGCAAGTCGCGGCGCTGACCCACGACATCGTGTGGATGG AAGAAGCCGAGGTCAACGGCCAGAAAGTCCTGACCCCCGTGCTCTACCTGGCCCAGGCCAATAACCGCCTGGCCCCCAACGGCGCGCTGATCCAGGGCCA GGACGTGAGCCTGATCACTGGCGGCGACCTGCACAACAGCGGCACCCTGCGTGCCACCAACAACCTGAACATGGTCGCGGGCAACATCGACAACAGCGGC CTGATGCAAGCCGGCAACCGCCTGGAAATGCTCGCCACCGACTCGATCCGCAACAGCCGTGGCGGCATCATCAATGGCCGCGACATCAGCGCCACCGCCG TGACCGGCGACATCATCAACGAGCGCACCGTCACCACCTTCAAACAGGACGGCCAGGGCTACCAACTGCGCAACGACGTGGCCAGCGAAGCCTCACGCTT CGAAGCCACCGACACGCTCAAGCTGAACGCCGGGCGCGATGTGCTCAACGTCGGCAGCAACCTGAAAGCCGGTGGCAACGCCAGCGTGACCGCCGGGCGT GATGTGCTGATCGCCAGCCAGACCGAACAGGACGACTACGCCTACCAACGCCGCCGCATCAGCGGCACCGAGCAAACCATCCTGCAACACGCCTCCGCCG TGGACGTGGGCGGCAACCTCGCCATCGACGCCCGCCGCGACATCGCAGTCGTCGCCAGCACCGTCAGCGCCGCCAAAGACCTCAGCGTCAAAGCCGGCGA AAACCTGACCCTGGCCGCCGCCGCCAACGAACAGCACGACTACTCCAAAGGCAAAAAAGGCGGCACCAAAACCACTACTCAACTGGACGACGTCACCCAA CAAAGCGCCGAACTCAAAGCCGGCGGCGACCTGATCGCTGTCGCCGGCACCGACCTGACTTTGGTTGCCAGCAAGATCAGCGCGGGTAACGAAGCCTATG TGCACGCTGATAACGAATTGCAAATGTTGGCGGCGCAAGACAGTCATTACTCGCTGTATGACATGAGCAAGAAGGGCAGTTGGGGCAGCAAGAAGACTCA GCGTGATGAAGTGACCGATGTGAGGAATGTCGGGAGCGAGATCAAGACTGGGGGGGATCTGACGCTGGAGAGCGGTGGGGATCAGAAGTATCAGGCGGCG AAGCTTGAGAGTGGTGGGGATATTGCGATTGTCAGTGGCGGGGCGGTGACGTTTGAGGCGGTGAAGGATCTGCATGACGAGAGCCACACCAAGAGCAAGA GTGACATGGTGTGGACGAGCTCCAAAGGCAAAGGCAACACCGACGAGACGCTACGTCAGACGCAGATGATTGCGCAAGGTAGCGTCGTGATTAAAGCGGT CGATGGTTTGAAGATTGATATCAAGCACATTGATCAGCACACCGTCAGCCAAACCATTGATGTGATGGTTAAGGCCGACCCGCAACTGGCTTGGTTGAAA GAAGCCGAGCAGCGCGGGGACGTGGATTGGCGCAAGGTCCAAGAAGTTCACGATAGCTTCAAGTACAACAACTCAAGCCTGGGTGGTGGCGCGGCGTTGG TCATCGCCATCATTGTCACTTACTTCACCTGGGGCGCTGGAGCGGGTCTTGTGGGAGCGGCGTCTACTACAACAACCGGTCTCGTTGCGAACTCGGTGGT TACTGCGGTCGCAGTCAAAGGCGCGACAAGTACCATCAACAACAAAGGGAACTTAGGCGATATTGCCAAGGATGTGACGTCGGGCGATAGCCTGAAAGGC TATGCAATCGCAGGGCTCAGTGGGGCGATAGCGAAGTTTGCCGGCGTCACCGGTGAATTCACTGCCGCAGACCTTGGGAGGCAATTGGCGGTCAACTCGG CGCTGAGAACTGTCACCAATGGCGGCAGTTTTACTAAGAATATCGGTCAAGCAGCTATTGATCTGACTGCCAGCGTTCTCTCTGGAATGATTTATGAGCG TGTGGGGACCGAACTCGTTGGTTCCAACCTTTCCACTAAGGTGGCAGTGCATGCGATTGTCGGAGGATTAATCGCCGAAGCGACAGGAGGAGATTTCGCT TCTGGTGCTATTGCTGCTGGCGCGAATAAAGCCCTGATACAAACGTTCGGTGAGAAGTTATTCCCTGGCGAGGCCCACGATCGCGTGTTGGCCATGACTT CCCAGCTAATCGGAATGACGGTTGCGGCAGGTGTGGGTGGGAGTGCAAAAGACCAAGAGGTAGCGGGGTGGGTAGCGCAGCAGGGCACAATTTATAACGA GCTGCAGCACAAGGAGGTTGAAGCGCTCATTGGTGAGGCTAAAACCTGTACTGCAACAGACAGTTGCAGGGACGTCATCAATAAATATGCTGATTTGAAT GAGGCTAACGAAAAACGCCTGAATGCTATTTGTGAAAGCGATCCTGCTAAGTGCAAGGAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTTATGGCGACTGGGTGGCGAGCTATGACAAAACCCATGAGATGATTTCTCAAGTACGAGCCCACGGTGACCTACCTGATGAGGTGGAACGCATGCTGG GGGCAGTTGACTTGCTGAACGTCAACTCCCGATTGAAGGTGGTTGGTGTAGGCATTGTCGATGGTGCTTTGCAGGCAGCGAGTAACGCGGCTGGGGAAGC AGGCGTTGACATAGCCCCTGAGACGGTGGGTATGCTTTCCAAGTGGACAGCTATGCTGTTTGGAGTTAAAAAAGCGGGCGGTGCAAATGCAAAGCCACTG GTAACTAAAGGAAGCGATGTAACTCCAGAAATTATCCAGAAAGCACTGAGGGATGACAAAACTATTAGTGCGCAAGATGGTGTTTCTCTGCCAATGATTC AACGGTACGTTGATAGGCTCCTTAAAGGGGATGTTGCTCCACCAATTAAAATGGATGGCAATGTTATTGTGGATGGGAATCATAGATATATTGCAGCTAA
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| Amino Acid Sequence |
>hemagglutinin
MALDSRAPSITRVQGLPEIAPVDNSHKYLIETNPALTDLKQFMSSDYLLGKLGYNPDASWKRLGDGLYEQRLIREAVVARTGQRYINGLASDDQLFRYLM DNAISYKDSLNLQLGVSLTAEQVAALTHDIVWMEEAEVNGQKVLTPVLYLAQANNRLAPNGALIQGQDVSLITGGDLHNSGTLRATNNLNMVAGNIDNSG LMQAGNRLEMLATDSIRNSRGGIINGRDISATAVTGDIINERTVTTFKQDGQGYQLRNDVASEASRFEATDTLKLNAGRDVLNVGSNLKAGGNASVTAGR DVLIASQTEQDDYAYQRRRISGTEQTILQHASAVDVGGNLAIDARRDIAVVASTVSAAKDLSVKAGENLTLAAAANEQHDYSKGKKGGTKTTTQLDDVTQ QSAELKAGGDLIAVAGTDLTLVASKISAGNEAYVHADNELQMLAAQDSHYSLYDMSKKGSWGSKKTQRDEVTDVRNVGSEIKTGGDLTLESGGDQKYQAA KLESGGDIAIVSGGAVTFEAVKDLHDESHTKSKSDMVWTSSKGKGNTDETLRQTQMIAQGSVVIKAVDGLKIDIKHIDQHTVSQTIDVMVKADPQLAWLK EAEQRGDVDWRKVQEVHDSFKYNNSSLGGGAALVIAIIVTYFTWGAGAGLVGAASTTTTGLVANSVVTAVAVKGATSTINNKGNLGDIAKDVTSGDSLKG YAIAGLSGAIAKFAGVTGEFTAADLGRQLAVNSALRTVTNGGSFTKNIGQAAIDLTASVLSGMIYERVGTELVGSNLSTKVAVHAIVGGLIAEATGGDFA SGAIAAGANKALIQTFGEKLFPGEAHDRVLAMTSQLIGMTVAAGVGGSAKDQEVAGWVAQQGTIYNELQHKEVEALIGEAKTCTATDSCRDVINKYADLN EANEKRLNAICESDPAKCKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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