Pseudomonas sp. BRG-100, JH25_RS12885
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. BRG-100 scaffold00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGAGCCGGACGGCAATGTCAGCATCGTGTTGGGTCAGCACCATATCCGCGCGACCACTGGTGAGTTCACCTTCACCTCCAAATTGGTTGACGGCAAGT TCCCGGATTACGAGCGTGTGTTGCCTAAAGGTGGCGACAAGCTGGTGATTGGCGATCGCCAGGCCTTGCGTGAAGCGTTCAGCCGTACTGCGATTCTGTC GAACGAAAAGTACCGTGGTATTCGCCTGCAATTGGCCAACGGCCAATTGAAAATCCAGGCCAACAACCCGGAGCAGGAAGAGGCAGAAGAAGAAGTGGGC GTCGACTACAACGGCGGCTCTCTGGAAATCGGCTTTAACGTGAGCTACCTGTTGGACGTGCTGGGCGTCATGACTACCGAACAGGTTCGCCTGATCCTGT CGGACTCCAACAGCAGCGCTCTGGTGCAAGAATCCGATAACGACGACTCGGCTTACGTTGTCATGCCGATGCGCCTGTAATCATGCTCAGCAGAAGCTAG
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| DNA Sequence for Gene |
>JH25_RS12885
ATGTCCCTTAGTCGCGTCTCTGTCACCGCGGTGCGTAATCTGCACCCGGTGACCTTCTCCCCTTCCCCCCGCATCAATATCCTCCATGGCGCCAACGGCA GTGGCAAAACCAGTGTGCTGGAAGCTATCCACTTGTTGGGGCTGGCCCGTTCCTTCCGCAGTGCCCGCCTGTTGCCGGTGATTCAGTACGAACAGTTGGC GTGTACAGTGTTTGGCCAAGTCGAGTTGGCGGAAGGTGGTCAGAGTGCACTGGGGATATCCCGCGATCGCGGCGGGGAGTTTCAGATTCGTATCGACGGG CAAAATGCGCGCAGTGCCGCACAACTGGCAGAAATTCTGCCGTTGCAGTTGATCAACCCCGACAGCTTCCGCCTGTTGGAAGGTGCACCGAAAATCCGCC GCCAATTTCTGGATTGGGGTGTGTTCCACGTGGAACCCCGCTTCATGGCCACTTGGCAGCGCCTGCAGAAGGCCCTGCGGCAGCGGAACTCATGGCTGCG GCATGGTACACTTGACGCCGCTTCGCAAGCAGCCTGGGACCGAGAGCTATGCCTGGCCAGCGACGAAATAGATGAGTACCGTCGTGCCTATATCAAAGCC TTGAAACCAGTCTTTGAGCAGACCTTGAGCGAGTTGTTGGACCTCGAGGGGCTGACGCTGAGTTACTACCGAGGTTGGGATAAAGACCGTGAGCTCAGTG CTGTGCTTGCGACGTCCCTGCAGCGGGATCAGCAAATCGGACACACCCAGGCCGGCCCCCAACGCGCTGATTTGCGCCTTAGATTAGGTGCACATAATGC TGCGGATATTTTGTCCCGCGGCCAGCAGAAGTTGGTGGTGTGTGCGCTGCGTATTGCGCAAGGGCACTTGGTTAGCCAGGCAAGGCGCGGTCAGTGTATT TATCTGGTGGATGACTTGCCGTCGGAGCTCGACGAACAGCACCGCCGTTCGCTATGCCGCTTGTTGGAAGACTTACGCTGCCAGGTATTCATTACCTGTG TAGACCACGAATTATTGAGGGAAGGCTGGCAGACGGAAACGCCAGTCGCTTTGTTCCACGTGGAACAAGGCCGTATCACCCAGACCCACGACCATCGGGA GTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGCATGAGCGAAGAAAACACGTACGACTCGACCAGCATTAAAGTGCTGAAAGGTTTGGATGCCGTACGCAAACGTCCCGGTATGTACATTGGCGACACC GATGATGGTAGCGGTCTGCACCACATGGTGTTCGAGGTGGTCGATAACTCCATCGACGAAGCTCTGGCCGGTCACTGCGACGACATCAGCATTATCATCC ACCCGGATGAGTCCATTACCGTGCGTGACAACGGTCGTGGCATCCCGGTAGACGTGCACAAAGAAGAAGGCGTTTCGGCGGCAGAGGTCATCATGACCGT GCTCCACGCCGGCGGTAAATTCGACGACAACTCCTATAAAGTATCCGGCGGTTTGCACGGTGTAGGTGTGTCGGTAGTGAACGCTCTGTCCGAAGAGTTG ATTCTCACCGTTCGCCGTAGCGGCAAGATCTGGGAACAGACTTACGTCCACGGTGTGCCACAGGAACCGATGAAAATCGTTGGTGACAGTGAAACCACCG
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| Amino Acid Sequence |
>recombinase RecF
MSLSRVSVTAVRNLHPVTFSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPVIQYEQLACTVFGQVELAEGGQSALGISRDRGGEFQIRIDG QNARSAAQLAEILPLQLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAASQAAWDRELCLASDEIDEYRRAYIKA LKPVFEQTLSELLDLEGLTLSYYRGWDKDRELSAVLATSLQRDQQIGHTQAGPQRADLRLRLGAHNAADILSRGQQKLVVCALRIAQGHLVSQARRGQCI YLVDDLPSELDEQHRRSLCRLLEDLRCQVFITCVDHELLREGWQTETPVALFHVEQGRITQTHDHRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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