Pseudomonas sp. BRG-100, JH25_RS12915
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. BRG-100 scaffold00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCAAGCCGGTGGCATCGAGTGCTACCCGGTGACCGGCGAGATCACCTACGGCCTCGAGCGCCTGGCCATGTACCTGCAGGGCGTGGACTCGGTCTACG ACCTGGTATGGGCTGACGGCCCGTTCGGCAAGGTGACTTACGGCGATGTGTTCCACCAGAACGAAGTGGAGCAGTCCACCTACAACTTCGAACACGCCAA CGTCGAGAAGCTGTTCGAACTGTTCGACTTCTATGAAAGCGAAGCCAAGCGCCTGATCGAACTCGACCAGCCGCTGCCGCTGCCAAGCTATGAAATGGTG TTGAAGGCGTCCCATACCTTCAACCTGCTGGACGCCCGCCGTGCCATCTCGGTAACTGCGCGCCAGCAATACATCCTGCGTGTGCGCACGCTGGCGCGTT CCGTCGCCCAAGCCTATTTGCTGGCTCGCGCCAAGCTGGGCTTCCCGATGGCAACCCCTGACCTGCGTGATGAAGTGTTGGCTAAGCTGGAGGCTGCACA
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| DNA Sequence for Gene |
>JH25_RS12915
ATGAGTGCTCAAGATTTCCTGGTTGAACTGGGCACCGAAGAGCTGCCACCCAAGGCACTCAATACCCTGGCCGATGCATTCCTGGCCGGTATCGAAAAAG GCCTGCAGACTGCCGGCCTGAAGTTTGAAGCCAAAAAAGTCTACGCCGCGCCGCGCCGCCTGGCTGTGCTGCTGACCGCGCTGGAAACCCAGCAGCCGGA CCGCAACATCAACCTGGACGGCCCACCGCGCCAGGCAGCTTTCGATGCCGAAGGCAACCCGACACAAGCCGCCCTTGGCTTTGCCAAGAAATGTGGCGTA GAGCTGAGCGAGATCGACCAGAGCGGCCCGAAACTGCGTTTCAGCCAGGTCATCACCGGCAAGCCGACCGCCAGCCTGCTGCCGACCATCGTTGAAGACT CCCTGAACGACCTGCCTATCCCCAAGCGCATGCGCTGGGGTGCGCGCAAGGAAGAGTTCGTACGTCCGACCCAATGGCTGGTAATGCTGCTCGGTGACCA GGTCATTGATTGCACCATCCTCGCCCAGAAGGCTGGTCGTGATTCCCGTGGTCACCGCTTCCATCATCCCGAAAGCGTGCGCATCACTTCGCCGGCCAAC TACCTCAACGACCTGCGCGCCGCTTACGTATTGGCCGATGCCAATGAGCGTCGCGAGCTGATCAGCAAGCGCACCGAAGAATTGGCCCGCCTGCAGGAAG GCACCGCCATCGTGCCGCCAAGCCTGCTGGACGAAGTGACCGCTCTGGTGGAGTGGCCGGTGCCGCTGGTGTGCTCGTTCGAAGAGCGTTTCCTCGACGT GCCACAAGAAGCGTTGATCACCACCATGCAGGACAACCAGAAGTATTTCTGCCTGCTGGACGCAGACGGTAAGTTGCTCCCGCGCTTTATCACCGTGGCC AACATCGAGAGCAAGGACCCGCAGCAGATCATCGCCGGTAACGAGAAAGTCGTTCGCCCACGCCTGACCGATGCAGAGTTCTTCTTCAAGCAAGATAAGA AGCAGAAGCTCGAAGACTTCAACCTGCGCCTGCAAAACGTGGTGTTCCAGGAAAAACTCGGCAGTGTCTACGACAAGGCCGTGCGGGTTTCCAAGCTGGC GGCCTACATTGCGCCACGCATCGGCGGCGACGCAGCCTGGGCCGCCCGTGCCGGCTTGCTGTCCAAGTGCGACCTGGCCACCGAGATGGTTGGCGAGTTC CCTGAGATGCAAGGTGTCGCCGGTTACTACTACGCCCTCAACGACGGCGAGCCGGACGACGTCGCCCTGGCCCTGAACGAGCAGTACATGCCACGCGGTG CCGGTGCAGAATTGCCGACCACCCTGACGGGTGCGGCCGTGGCCATCGCCGACAAGCTCGATACGCTGGTGGGTATCTTCGGTATCGGTATGTTGCCCAC CGGTAGCAAAGACCCGTATGCCCTGCGCCGTGCGGCATTGGGCGTGCTGCGGATCCTGATCGACAAGAAGCTGGATCTCGACCTGACCCAGGCCGTGGTG TTCGCGGTCGGCCAGTTCGGGACCAAGGTCAAGCAAGCCGGCCTGGCCGAGCAAGTGCTGGAGTTCGTGTTCGACCGCCTGCGTGCGCGTTACGAAGACG AAGGCGTGGACGTTTCCGTCTACCTGTCGGTACGTGCCCTGCAACCGGGTTCGGCACTGGACTTCGACCAGCGCGTACAAGCCGTACAAGCGTTCCGCAA GCTGCCGGAAGCCGATGCCCTGGCGGCCGTGAACAAGCGTGTGTCGAACCTGCTGAGCAAGGCCGACAACCTCGGCAATGCCGACGTTGACCCAAGCCTG TTTGCCGATGCCAAGGAGTTCTCGCTGAACTCGGCCATCGCCAAGGCCGAGAACGCTGTGAAACCGCTGATCGCCGAGCGTAACTACGCTGAAGCGTTGG CGCGCCTGGCGTCTCTGCGTGAGCCGGTAGACGCGTTCTTCGAAGCGGTGATGATCAATGCCGACGATGCCGGCGTGCGGAAAAACCGTTACGCCATGCT CGCGCGTTTGCGTGGCCTGTTCATCAATATCGCTGACATTTCCGTATTGGGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCATGTTGAAACTGCTGATTCTCGATCGGGACGGGGTGATCAACTACGACTCCGACGCTTACATCAAGTCGGTACAGGAGTGGATCCCCTTGCCCGGCTC GATCGAGGCCATCGCGCAGTTGAGCAAAGCCGGCTGGACGGTGGCCATCGCCACCAACCAGTCCGGCATCGCCCGCGGTTACTACGACATCGCCACCCTG GACGCCATGCACGCGCGCTTGCGCACGTTGGTGGCCGAACAGGGAGGTGAGGTGGGGCTGGTGGTTTACTGCCCTCACGGGCCGGATGAGGGCTGCGATT GCCGCAAGCCCAAGCCTGGCATGTTGAAAACTATTGCAGAACATTACAAGGTGCCCTTGGCTGGGATATGGTTCGTCGGGGACAGCCTCGGTGACCTGGA GGCGGCCAAAGCCGTCGACTCTCAGCCAGTTTTGGTAAAGACCGGAAAAGGCGAAAAGACCCAGGCGAAAAACCTGCCGGTAGGCACTTTGATTTTTGAC
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| Amino Acid Sequence |
>glycine-tRNA synthetase subunit beta
MSAQDFLVELGTEELPPKALNTLADAFLAGIEKGLQTAGLKFEAKKVYAAPRRLAVLLTALETQQPDRNINLDGPPRQAAFDAEGNPTQAALGFAKKCGV ELSEIDQSGPKLRFSQVITGKPTASLLPTIVEDSLNDLPIPKRMRWGARKEEFVRPTQWLVMLLGDQVIDCTILAQKAGRDSRGHRFHHPESVRITSPAN YLNDLRAAYVLADANERRELISKRTEELARLQEGTAIVPPSLLDEVTALVEWPVPLVCSFEERFLDVPQEALITTMQDNQKYFCLLDADGKLLPRFITVA NIESKDPQQIIAGNEKVVRPRLTDAEFFFKQDKKQKLEDFNLRLQNVVFQEKLGSVYDKAVRVSKLAAYIAPRIGGDAAWAARAGLLSKCDLATEMVGEF PEMQGVAGYYYALNDGEPDDVALALNEQYMPRGAGAELPTTLTGAAVAIADKLDTLVGIFGIGMLPTGSKDPYALRRAALGVLRILIDKKLDLDLTQAVV FAVGQFGTKVKQAGLAEQVLEFVFDRLRARYEDEGVDVSVYLSVRALQPGSALDFDQRVQAVQAFRKLPEADALAAVNKRVSNLLSKADNLGNADVDPSL FADAKEFSLNSAIAKAENAVKPLIAERNYAEALARLASLREPVDAFFEAVMINADDAGVRKNRYAMLARLRGLFINIADISVLG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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