Pseudomonas sp. BRG-100, JH25_RS14490
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. BRG-100 scaffold00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCAGCTGGATGAGCTGCAAAAACGCCTGCTGCAACAACTGGCCGACTTCACCCCGCACCGTGCCGATCCACAGTGCCCCCAATGGCTGGCCACCGCCG TGCATGAGCCGCTGAATGATCCGCTGCGCCAACTGGCAATGATCCGCGCCACCGCCGAACTCTGCATCTACAAAGGTTAATGACTGCAAACAAGGTAAAA ATGTGGGAGCAAGCCCCCTCCCACATTTGGACTGTATGCATTCAGGGCCATCTCTGGCAGCTTCCTGAACAACCTTCACAAAACCGCACTATATTGGTGC GATAGGTTGCACCCTTACTCCAGCCACAGCCCATTTTGGTTCGAATCTTCCCGACAAAGCTGGCAGAACGCCACAGTTTCGCGCCACAAACCCCTATTTC AGGGCTTTAACGCTTCTTTTCGGAGCCTTGGTTTGGTTTTTGCATTTTCCTTGTATCAGCGTGTGCCTCAAGCCTGCGCCTTGCTCCAAAAGAGGTCCCG
|
|
| DNA Sequence for Gene |
>JH25_RS14490
ATGACCATCAGCGATGCACTGCACCGTTTGTTACTCGACAACCTGACCACCGCGACCATCCTGCTCAATGCCGACCTGCGCCTTGAGTACATGAACCCGG CGGCGGAGATGCTCCTGGCCATCAGCGGCCAGCGCAGCCATGGGCAGTTCATCAGCGAGCTGTTCACCGAGTCGGCCGAAGCCTTGAGCTCGTTGCGCCA GGCCGTGGAGCAGGCACATCCGTTCACCAAGCGCGAAGCGATGCTCACCGCCCTCACCGGCCAGACCCTGACGGTCGATTACGCCGTAACCCCCATTCTG AGCAATGGCGCCACGCTGCTATTGCTCGAAGTACACCCCCGCGACCGCCTGCTGCGCATCACCAAGGAAGAGGCGCAGCTGTCCAAGCAGGAAACCAGCA AGATGCTGGTGCGCGGCCTGGCTCACGAGATCAAGAACCCGCTCGGCGGGATTCGCGGCGCCGCGCAGCTGCTGGCCCGCGAGCTGCCCGAGGAGCATCT CAAGGACTACACCAACGTCATCATCGAAGAAGCCGACCGCCTGCGTAACCTGGTGGACCGGATGCTCGGCTCCAACAAGTTGCCGTCATTGGCGATGACC AACGTGCATGAGGTGCTGGAGCGCGTCTGCCAACTGGTCGAGGCCGAAAGCCAGGGCTGTATCACCCTGGTACGCGACTATGACCCAAGCATTCCCGATG TATTGATCGACCGCGAGCAGATGATCCAGGCGGTGCTCAATATCGTGCGCAACGCCATGCAGGCCATCAGCAGCCAAAACGAGCTGCGCCTGGGCCGCAT CAGTTTGCGCACCCGCGCCCTGCGCCAGTTCACCATCGGCCATGTGCGCCATCGCCTGGTGACCAAGGTCGAGATCATCGACAACGGCCCCGGCATTCCC GCCGAACTGCAGGAAACCATCTTCTTCCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGCCTGGCCATTACCCAGAACATCATCAGCCAGCACC AGGGCCTGATCGAATGTGAGAGCCATCCCGGCCACACCACGTTCTCGATCTTCCTGCCATTGGAACAAGGAGCCCCCACGACATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCGTAGTGAAACTGTCTGGATCGTCGATGACGACCGTTCTATCCGTTGGGTCCTGGAAAAAGCCTTGCAACAGGAAGGCATGACCACCCAGAGCTTCGA CAGCGCCGACGGAGTGATGAGCCGCCTGGCACGCCAGCAGCCGGACGTGATCATCTCCGACATTCGTATGCCCGGCGCAAGCGGCCTGGACTTGCTGGCG CGCATCCGCGAGCAGCACCCGCGCTTGCCGGTGATCATCATGACTGCGCACTCGGACCTGGACAGCGCTGTCGCGTCCTACCAGGGCGGCGCCTTTGAAT ACCTGCCCAAGCCATTCGACGTGGATGAGGCGGTGGCGCTGGTCAAGCGCGCCAACCAGCACGCCCAGGAACAACAGAACCAGGAAGCCCCGCCAACCCT GACCCGCACCCCGGAAATCATCGGTGAAGCGCCAGCGATGCAGGAAGTGTTTCGCGCCATCGGGCGCTTGAGCCACTCCAACATCACTGTGCTGATCAAT
|
|
| Amino Acid Sequence |
>sensor histidine kinase
MTISDALHRLLLDNLTTATILLNADLRLEYMNPAAEMLLAISGQRSHGQFISELFTESAEALSSLRQAVEQAHPFTKREAMLTALTGQTLTVDYAVTPIL SNGATLLLLEVHPRDRLLRITKEEAQLSKQETSKMLVRGLAHEIKNPLGGIRGAAQLLARELPEEHLKDYTNVIIEEADRLRNLVDRMLGSNKLPSLAMT NVHEVLERVCQLVEAESQGCITLVRDYDPSIPDVLIDREQMIQAVLNIVRNAMQAISSQNELRLGRISLRTRALRQFTIGHVRHRLVTKVEIIDNGPGIP AELQETIFFPMVSGRPDGTGLGLAITQNIISQHQGLIECESHPGHTTFSIFLPLEQGAPTT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|