Pseudomonas sp. BRG-100, JH25_RS15770
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. BRG-100 scaffold00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGGGCGTTCTGCTGGACCGGAAACAGCGCCGGCTCCTGGCTCCAGTACCAACCCAGGCCACCGGTGACCAGCAGGTACAGGCCGATAATGCTGAGCAA AGCCCGGCTCATCAGCAAGTTGCGAAAATAGCTGCGGTTGGCCGACTTGGGCTCAGGGGCGGGGCCTTTGGCACTGCCTTCACGGTTTTTCCAGTCCAGC ATGGCGATATCCTTTCAATCACTTGAGTTCATGCACGTCAATTGTCCGGGTGCGTTCAGACACTCCGACCACAACCCTACCCCATCGTGCCCATCGTTGC GGGGCTTTTACGCGAAAGTGGCGCACAAGCAAGGTTGGACTATAAAGGATGCACGCTTTTTACGCTGCGCGACCCGCGGGTCAATAACTGAATATCCGGC ACGCAGACTTAATTGACGTATGACACTCATGCAACAGAAAAGAGGTGCTAGCATAGAGCCATCAGTCGACCTCAGCATGCACCCTCACAGTAGTCAGGAT
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| DNA Sequence for Gene |
>JH25_RS15770
ATGACCGAGTCAGAAGACCCTAGCCGCGAGCGTCTCAAGCAGCATTTTGCCCAGCGGGTAATTCATCAGGCACGTCAAATTCTTGAGATCTGGCAGCGCC TGCAACGCGGCGAATGGTCGAACGCCGACTTTTCCGAACTCAGCGAAGCCAACCTGCGCCTGCAGCGCTTCGCCGAGCGTTTTGAACAGCCCGAACACCG CCAACTGGCCCAGCATATTGGCCAAACTCTCCAGGCGGTGGACGAAAACCGTGGCCGTTTGAGCAGCCAACTGATCACCGAACTCAACCGCTTGATGCAG CGCCTGTCGCGCACCGGCCTGCGTCAGGGTGACCAGCTTGAGCAAACCCTGCTGCCACCGATGCGCAAACCGATCTACGTGATGCTGGCCGACCACGACC GCGCCGAGCGCCTGGCCAAGCAGCTGGAATTCTTTGGCCTGAGTGCCCAATCCCTGGACAGCGTCGCGGCTTTTCACACGGCCATGGCTGAGCGCCTGCC GTCAGCCATCGTCATGGACGTGGACTTTTGCGGCCCCGGCCTGGGCCTCACCCTCGCCGCGCAAGCCCAGGAGGGCCTGGAGCAAAAGCTGCCGCTGTTG TTTTTCAGCCTGCACGAAACCGACACGCCCACGCGCCTGGCCGCCGTGCGCGCCGGAGGTGAGGAGTTCCTGACCGGCACCCTGGAGGCTTCGAGCCTGC TGGAAAAGATCGAAGTGCTGACTTGCGTTGCCCAGTACGAGCCGTACAAAGTGCTGATCATTGACGACTCGCGGGCCCAGGCGCTGCACACCGAGCGCCT GCTCAACAGCGCCGGGATTGTCACGCGCACCTTGATCGAACCGATCCAGGCCATGGCCGAACTGGCGGATTTCCAGCCCGACCTGATCATCCTCGACATG TATATGCCCGCCTGTACCGGCACCGAACTGGCCAAGGTGATTCGCCACAACGACCGTTACGTCAGCGTGCCGATCATCTACCTGTCGGCCGAAGACGACC TGGACAAACAGCTGGACGCGATGAGCGAAGGCGGCGATGACTTCCTGACCAAACCGATCAAGCCGCGCCACCTGATCACCACCGTGCGCAACCGCGCAGC GCGTGCGCGCAACTTGAAGGCGCGGATGGTGCGCGACAGCCTGACCGGGCTGTACAACCATACGCATATCCTGCAATTGCTCGAAGACTGCAGCTTTCGC GCCCGCCGCGAGAACAAGCCATTGAGCTTTGCGATGCTGGATATCGACCACTTCAAACGTGTCAATGACAGCCACGGCCACCCCATGGGCGACCGGGTGA TCAAGAGCCTGGCGCTGTTTCTCAAGCAGCGCCTGCGCAAGACCGACTACATCGGCCGTTATGGCGGTGAAGAATTCGCCATTGTGATGCCCGACACCGA CGTGGAATCGGCCTGCAAGGTACTGGACGACATTCGGCGGCGCTTTGCAGAAATCCACTACCCCGCCCAACCGCAGGATTTGTGGTGCACCTTCAGCGCC GGCCTGGTGGAGCTGTGTGACGGTTGCGACAGCCTGACGATGGCTGCCCAGGCTGACGAAGCGCTATATCTTGCCAAGGACGCCGGACGCAACCGCGTGC AAGCCGCGCGCGCATCAAAGCAAAGTGCCATCTTTTCACCGGAATCCACCGAATCGGTCATAACTCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCAAGCGCAATAACTTCAGGCACTTATCTTTTGCCGTCGGTTGAAACCCCGCATGCGCCTCAAGCTGCTGACCAATCTCAATACCCTTCTGCTGGTGGC CGTATGCCTGGCCCTCGGGGCGACGCTGTGGTGGTCGCAACGGGCGCTGGAGCGGCCTTATTTATTGATGGAGCGCTACCTGGGCCTGTCCCAGGGCTTT CAAAACCAGGCAGCGCGCAATATCGACGACTACCTGGCCAGCGGCGATGCCCTGCGCCTGAGCAGCGCCAGTCAAAGCCTGGAGAGCCTGTTGCAGCAAC TCGCGCAATTGCCGGCCGAGTTAGCGCAAACCCTGCACCCCAGCCTTGCGGACCTGGAAACCTTCAGCAAGACTGACCTGCTGGCTGCAGGCAAGCTGGC CGGCGACCCGCAAGCACTGTTGGTTCAGGCCGAGCGCGAACTGGGCGCAAACCTGGAGCAACTGAGCCAGTACGCCAGCGGCGTCAACTCCACAGACGCA
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| Amino Acid Sequence |
>diguanylate cyclase
MTESEDPSRERLKQHFAQRVIHQARQILEIWQRLQRGEWSNADFSELSEANLRLQRFAERFEQPEHRQLAQHIGQTLQAVDENRGRLSSQLITELNRLMQ RLSRTGLRQGDQLEQTLLPPMRKPIYVMLADHDRAERLAKQLEFFGLSAQSLDSVAAFHTAMAERLPSAIVMDVDFCGPGLGLTLAAQAQEGLEQKLPLL FFSLHETDTPTRLAAVRAGGEEFLTGTLEASSLLEKIEVLTCVAQYEPYKVLIIDDSRAQALHTERLLNSAGIVTRTLIEPIQAMAELADFQPDLIILDM YMPACTGTELAKVIRHNDRYVSVPIIYLSAEDDLDKQLDAMSEGGDDFLTKPIKPRHLITTVRNRAARARNLKARMVRDSLTGLYNHTHILQLLEDCSFR ARRENKPLSFAMLDIDHFKRVNDSHGHPMGDRVIKSLALFLKQRLRKTDYIGRYGGEEFAIVMPDTDVESACKVLDDIRRRFAEIHYPAQPQDLWCTFSA GLVELCDGCDSLTMAAQADEALYLAKDAGRNRVQAARASKQSAIFSPESTESVITL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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