Pseudomonas sp. BRG-100, JH25_RS24560
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. BRG-100 scaffold00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTTTGCCGACACTGCGACAGCCGAGTGGATTGCGCTGCACGTGATGCGCCATGTGCGCAAGCCTGCGCCCAGTGAAGTCGTGACCGACCTGACGACCCAA CCCTGGGACGCGGCGTTGGAAGCGGTAATGCCTTGTCTGCGCAAGGACGGGCTCAAAGCCGCGGTGGGTGTGATCAAGCAAGGCTTGTAGGGCGCGGTCA GTGATCGCTGCCGTTTTCATTGGCGCCTGGCGCTGGCCAGGCTGTGCATGGCGGCCGGCAAACACGAGCTGGCCAGGATCCAGCTGGAGCAACTCGATCT TCAATTACAGCGCACGGGCCTGGAAAGTTGGGAGCCGGCGTTGGCCCTGCAAGTCGCTCAGCTCCTGTACCGCTGCTACGACCTGCTACCTCAAAGCCAA GCCATACGCGACGGCAAGGATGCCCTGCATCGCCGGTTGTGTCATTTCGACCTGGAAGCAGTACTTCAATAGCGCCTCATCAAATAAAAGGAAAAGCACC
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| DNA Sequence for Gene |
>JH25_RS24560
ATGGCCAAAGACGGTTCGGTAGCCCCCAAGGAACGTATCAATATTACCTTCAAACCCGCGCTCGGCGGTGCCCAGGAAGAGGTCGAGCTACCGTTGAAGC TGCTGGTGCTGGGGGATTTTTCCAAACGTGCGGACCTGCGCAAGCTGGAAGATCGCAAGCCCATCGGTATCGACAAGCACACCCTCGACGAGGTGTTGGC CAAGCAAGCAGTGAGCCTGACGCTGAACGTACCCAATCGCCTCCAGGATCAAGCCGACGTGGAAGAATTGGCGATCCAGGTTCGCATCAACGCGATGAAA GACTTCAATCCCGCGAATCTTGTCGAGCAGATCCCGGAGTTGCAAAAGCTGATGGCACTGCGTGAAGCACTGGTGGCGCTCAAGGGACCATTGGGCAACA CCCCAAGCTTTCGCAAGGCGATCGAGCAGGCATTGACCCATGGTGATTCCCGCGCACGAGTTCTGGCCGAGCTTGGGCTGCCCAGCCCAGACGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CATTTTCAGTAAAAGGACACTGATACCATGACCACGATTCAACACGAGCTGCAATCGGTACAGACTATCCACACCTGCAGCATCCTCGACAACATCACTG CCCAGACATTGCTGAGCGCCGACGACGAGGCTTACGGCATCGCCAAGCGCGGCGTATCGGCGTTTATCGCGGAGCTGCTCAAGCCACACAACCGTGACGA ACCGGTAAAGAAACGCCTGGTCGACCGGATGATCGCCGAAATCGATACCAAGCTCAGCCAGCAAATGGATGAGATCCTGCACCATCCCGACTTCCAGGCG CTGGAAGCTTCCTGGCGGGGGTTGCAGTTGCTGGTCGACCGCACCAATTTTCGCGAGAACATCAAGATCGAGCTGTTGAATGTCTCACGCGAAGACCTGC TGGATGATTTCGAGGATTCCTCGGAAATCACTCAGTCCGGGCTTTACAAGCATGTTTACAGCGCTGAATACGGTCAGTTCGGTGGGCAGCCGGTGGGTGC
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| Amino Acid Sequence |
>type VI secretion protein
MAKDGSVAPKERINITFKPALGGAQEEVELPLKLLVLGDFSKRADLRKLEDRKPIGIDKHTLDEVLAKQAVSLTLNVPNRLQDQADVEELAIQVRINAMK DFNPANLVEQIPELQKLMALREALVALKGPLGNTPSFRKAIEQALTHGDSRARVLAELGLPSPDA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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