Pseudomonas sp. BRG-100, JH25_RS24655
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. BRG-100 scaffold00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCGGGCAGCGCTTTCTGGAGATCTGGTCGGGGCTGCCGGTGCTCTACCTGCTGATCATCCTCGCCAGCTTCGTGCAACCCAACTTCTGGTGGCTGCTG GGGATCATGCTGCTGTTTTCCTGGATGAGCCTGGTGGATGTGGTGCGCGCCGAGTTCCTGCGCGGGCGCAACCTTGAGTACGTGCGCGCAGCACGGGCGC TGGGCATGCAGAACGGCGCGATCATGTTCCGCCATATCCTGCCCAATGCGATGGTCTCGACCATGACCTTTTTGCCATTCATCCTTACCGGCGCCATCGG CACCCTCACCGCCCTGGATTTCCTTGGCTTCGGCCTGCCGGCGGGTTCGCCGTCGCTGGGTGAACTGGTGGCCCAGGGTAAATCCAACCTGCAAGCGCCG TGGCTGGGCATGAGTGCCTTTGCCGTACTGGCGATCATGTTGAGCCTGCTGGTGTTTATCGGCGAGTCCGCTCGCGATGCGTTCGACCCGAGGAAATGAG
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| DNA Sequence for Gene |
>JH25_RS24655
ATGAATCCGGACAATCTGATTGAAATCCGTGACCTCAGTGTCGAGTTTGTCACCGGTGAACATCACCACCGCGTGGTCAACCAGGTGAGTTTCGACATCA AACGGGGTGAGACCCTGGCACTGGTCGGCGAAAGCGGCTCCGGAAAGTCGGTAACGGCCCACTCGATCCTGCGGCTGCTGCCCTACCCGTTGGCGCGACA CCCGAGCGGCACTATCGAATACGCCGGGCAAGACCTGCTGACCCTTAAAGAAAAGACCCTGCGGCATATTCGCGGCAACCGCATTGCAATGATCTTCCAG GAGCCGATGACCTCGTTGAACCCGCTGCACTCCATCGAGAAGCAAATCAACGAAGTACTCGGCCTGCACAAGGGCCTGACGGGCAAGGCCGCCACCCGGC GCACCCTGGAATTGCTGGAGCTGGTGGGCATCCCCGAACCGCACAAACGCCTCAAGGCGCTGCCCCACGAATTGTCCGGCGGCCAGCGCCAGCGGGTGAT GATCGCCATGGCGTTGGCCAATGAGCCGGAGCTGCTGATCGCCGATGAGCCGACCACGGCCCTGGATGTCACCGTGCAGTTGAAGATCCTGGAGTTGCTC AAGGAGTTGCAGGCGCGGCTGGGCATGGCGCTGTTGCTGATCAGCCACGACCTCAACCTGGTGCGACGCATCGCCCATCGCGTGTGCGTGATGCAGCAAG GTTGCATCGTGGAGCAGGCCGAGTGCGAGACATTGTTCCGGTCGCCCCAGCACCCCTATACCCAGGAATTATTGGCAGCAGAGCCCAGCGGCGGGCCGGC CGGCAATGAGGTCGGCCCACCGTTGCTGGAAGTAGACGACCTGAAAGTCTGGTTCCCGATCAAGAAAGGCTTTTTGCGCAACACCGTGGATTACGTCAAG GCGGTGGACGGCATCAATTTCAGCCTGCCCCAGGGGCAAACCCTGGGCATCGTCGGTGAAAGTGGCTCGGGCAAGTCCACCCTGGGCCTGGCGATTTTGC GCCTGATCGGCAGCAAGGGCGGGATACGCTTCGAAGGCCAGCAACTGGACACGCTTACCCAGCAACAGGTGCGCCCGTTGCGCCGGGAAATGCAGGTGGT GTTCCAGGACCCATTCGGCAGCCTGAGCCCGCGCATGTGCGTCAGCGAAATCGTCGGCGAGGGCTTGCGCATCCACAAGATGGGCACGCCTGACGAGCAG GAAGCAGCGATTATCGCAGCGCTCAGGGAAGTGGGCCTGGACCCCGAATCCCGTCATCGCTACCCCCACGAATTCTCCGGTGGCCAACGCCAACGTATCG CCATCGCCCGCGCCCTGGTGCTCAAGCCGCGCCTGATTTTGCTGGACGAGCCCACCTCGGCCCTGGACCGCACGGTACAACGCCAGGTGGTTGAGTTGCT GCGCGGCTTGCAGGCCAAGTACAACCTGACGTACCTGTTTATCAGCCATGACCTGGCGGTGGTGAAGGCGCTCAGCCACCAACTGATGGTGGTCAAGCAA GGCCAGGTGGTGGAGCAAGGCGATGCCAAGGCGATTTTTGCCGACCCACAACATGCCTACACCCGCCAATTGCTCAAGGCCGCCTTTTTGGTACCTGCCT GA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CATCACATCAAGGCTGACGCCACTGGCGGTGTGTGTAAAGATCAGCCCTCGATCTCTCAAGGGATGGAGCCACCGCCATGTCGCTGAACACCACTGCCCG CCCCGCTCAGGCGCCTTGTTTCTGGCGCGACGAACGCTTGCCGTTTATCGAGGCGCGCACCATTGCCGACGGGCGCAAAGTCACCTATACCCGGCACGCC CATGAGCACTTTTCCATCGGCGCGATTACCGCCGGGCGCAGCTATTACCACTACGACATACAGACGTTCGAGATCAGCGCAGGCACCGTGGTGCTGATGA ACCCCGGCGACGTGCACGCCTGTAACCCTATCCAGAATGAGCATTGGTCCTACCATATGCTCTACCTGGACACACCCTGGCTGACCGACCTGCAGCACCA GTTGGGTTTCAGCACCGACCAGGGTTACCGCCCGTTCAGCACCCCCTATACCCTAGACGTCTCGCTGTATAACGGCTTATTGGCGTTGTACCGACTGTTG
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| Amino Acid Sequence |
>microcin ABC transporter ATP-binding protein
MNPDNLIEIRDLSVEFVTGEHHHRVVNQVSFDIKRGETLALVGESGSGKSVTAHSILRLLPYPLARHPSGTIEYAGQDLLTLKEKTLRHIRGNRIAMIFQ EPMTSLNPLHSIEKQINEVLGLHKGLTGKAATRRTLELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELL KELQARLGMALLLISHDLNLVRRIAHRVCVMQQGCIVEQAECETLFRSPQHPYTQELLAAEPSGGPAGNEVGPPLLEVDDLKVWFPIKKGFLRNTVDYVK AVDGINFSLPQGQTLGIVGESGSGKSTLGLAILRLIGSKGGIRFEGQQLDTLTQQQVRPLRREMQVVFQDPFGSLSPRMCVSEIVGEGLRIHKMGTPDEQ EAAIIAALREVGLDPESRHRYPHEFSGGQRQRIAIARALVLKPRLILLDEPTSALDRTVQRQVVELLRGLQAKYNLTYLFISHDLAVVKALSHQLMVVKQ GQVVEQGDAKAIFADPQHAYTRQLLKAAFLVPA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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