Pseudomonas sp. Eur1 9.41, CD10_RS0127605
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. Eur1 9.41 CD10DRAFT_unitig_0_quiver.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCGCCTGGACCGCCTGGACTCGGCGCGCATCGGCAGCTCCCGCGCCATTACCCAGCTGATCCTGAACCTGGTGGAAGGCACGCCGATCCGTCTGTTCG ACGGTGGTGAGCAGAAGCGTTGCTTCACCGACATTGCCGACGGCATCGAAGCCCTGGCGCGCATCATTGATAACGACAATGGCGTGTGCGACGGCCAGAT CATCAACATCGGCAACCCCGAAAACGAAGCCAGCATCCGCCAGTTGGGCGAAGAGCTGCTGCGTCAGTTCGAGGCTCACCCGCTGCGCCACAACTTCCCG CCGTTCGCTGGGTTCCGCGACGTCGAGAGCAAGGCGTTCTACGGCACCGGCTACCAGGACGTGGCGCACCGCAAGCCAAGCATCGAAAACGCCAAGCGCC TGCTGAACTGGGAGCCGAGCGTGCAGATGAGCGAAACCATCGGCAACACGCTCGATTTCTTCCTGCGTGAAGCCATGCTTGAAATTGCGGACAAAAAGTA
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| DNA Sequence for Gene |
>CD10_RS0127605
ATGCAGGCAGGTCTTCGCATCGACGTCGACACCTACCGCGGCACCCGTGAAGGTGTGCCACGGTTGCTCGACTCCCTGGCCGAAGCCGGGGTCAAAGCGA CGTTCTTCTTCAGTGTCGGGCCGGACAACATGGGGCGCCACTTGTGGCGCCTGATCCGCCCGCAGTTTTTGTGGAAGATGCTGCGTTCCAACGCTGCCGG CCTGTATGGCTGGGATATCTTGCTGGCCGGTACCGCCTGGCCAGGCAAGCCGATTGGCCGCGACCTGGGGCATTTGATGCGCCAGGCCAAGGCCGCCGGG CATGAAGTCGGCCTGCACGCCTGGGACCACCATGGCTGGCAGGCCAACACCGGGCGCTGGAGCGAGGCACAGCTGGTCGAGCAGATTCGACGCGGCGTAG ACACCTTGAGCGACATCCTCGGCGAGCGCGTCGACTGTTCAGCGGCCGCCGGCTGGCGTGCCGATGAGCGCGTGGTGCAAGCCAAGCAAAGCTTCAACTT TCGCTACAACAGCGATTGCCGGGGCACCAGCCTGTTTCGACCAACCTTGGCCGATGGCAGCGCGGGCACCCCACAAATTCCGGTAGACCTGCCGACCTTC GACGAAGTTGTCGGGCCGGTGGTGGCTGCCAACGATTTCAACCGCTTCATTCTTGATCGGTTCAGCGCGTCAAAGCTGAACATCTATACGATCCACGCAG AAGTAGAAGGGATTCTGATGGCCAATGATTTTCGCCAGTTGCTCGCCCAGGCCGGGCAGCGCGGCATCGAGTTCAAACCCTTGGGCGAGCTGTTGCCCGC GGATGTGACCACCCTGCCCCAGCAACAGCTGGTGCGCGGCGCTTTGAGCGGCCGCGAGGGTTGGCTGGGAGTGCAGCAGGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGCCGCTGGGCGTTGCCCCTGCTCCTGCTGGCGTTCGCCGTGTTCTACTTGCTGCCGTTGGCCACCCATGGCCTGTGGATTCCCGATGAAACCCGCTA TGCGCAAATCAGCCAGGAAATGCTGCTGACCGGCAAATGGGCCGCGCCGCACTTCATGGGCATTCGCTACTTCGAAAAGCCCGCCGCAGGCTATTGGATG ATCGCGCTGGGCCAGGCGATCTTCGGGCAGAACCTGTTTGGCGTACGGTTTGCCTCGGCCTTGAGCACCGGTTTGAGCATTCTGCTGGTGTATCTGGTGT CTCGCCGGTTGTGGAACGACCCGCAAAAGAGCCTGGTCAGCACGCTGCTCTACATGAGCTTTGTCAGCGTGGCCGCGTTGGGCGGCTATGCCAACCTGGA CCCGCAATTCACCTTTTGGGTCAACCTGACGGGCGTGGCCTTGTGGTTTTGTTTCGACAGCACCACGCGGCGTGCGCGCTTATGGTCCTGGGCCTTGCTG
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| Amino Acid Sequence |
>4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase
MQAGLRIDVDTYRGTREGVPRLLDSLAEAGVKATFFFSVGPDNMGRHLWRLIRPQFLWKMLRSNAAGLYGWDILLAGTAWPGKPIGRDLGHLMRQAKAAG HEVGLHAWDHHGWQANTGRWSEAQLVEQIRRGVDTLSDILGERVDCSAAAGWRADERVVQAKQSFNFRYNSDCRGTSLFRPTLADGSAGTPQIPVDLPTF DEVVGPVVAANDFNRFILDRFSASKLNIYTIHAEVEGILMANDFRQLLAQAGQRGIEFKPLGELLPADVTTLPQQQLVRGALSGREGWLGVQQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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