Pseudomonas sp. Eur1 9.41, CD10_RS0126240
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. Eur1 9.41 CD10DRAFT_unitig_0_quiver.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGTGATGGAGAGGTACGCGGGTGTGGGCATGACGGGTTTCCTTGCCTGATTGAGTAGGTATTGCCGGGCAGCGAGAGCGCTGACCGGGCAGGTTCCTA TAACAAGAAGCGTGCCTGAAAGTGTGAGGCTCAATGAAATAAGGGCGAAAAAGACTCAGCATCCTTTATTGAGTGTTTGCTGTAGTGCTGTGGGTGGTTT TTAGCGTAATTAGTTGCGCGCATATGCGCATTTAGTTGCTCACGTCATATGTTTTGTAAATGCATGGTTTTAGGCTGTGGATGATGGGTTTCGCTTGGGT GGGCTGCGCAAATAGCTGCGCAGGCCTTTATTTTCAGGCGGTGTAGGATGTTTCTTAAGTTCCGTTCTGTTACTTGCTGATTGTTTTTTTCGTGGCTAAG GTTCGCTCACTTCAATGTGTTTTGAGCGGAAGTTCAAGGGCGGTTTAACAATGATGTTAATTTTGCCTACTTTGCCTTGGATGGTTGTGTGCAGCCCAAA
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| DNA Sequence for Gene |
>CD10_RS0126240
ATGGTTTATTCAGAAAAGCAATATACCTATTACTTAGAACTTGCACGGACAGCGTGCTCGCCAAGCAGTTTTGTTGGCAGTGATATGCGCTATTCAAGTG AGTTTGAAGTGCTGGAAACCGAGCTGGGCAAGGCGCACTCCATTCATGGGGCGGGCCTGCCGGATTGGCAGAAGATCAGCGAAATCAGTGAGTGCATTCT GCGTGAGCATTCAAAGGATCTGCGCGTCGCCGCCTGGTTGGCCTGGGCCCTGTATCAGCGTGATTCATTTGCTGGGTTGCTGGCGGGACTCGGTGTGTTG CGTGAACTCTGCGAGCATCATTGGGCGCAGGTCTATCCCGTTAAGCTGCGTACCCGCATTGCGGCGTTTGGCTGGTTGGTGTCGCGCCTTGAACAAGCGT GTGCGCACGACGTCTCGCTCGAGGATCAACGACCCTTATGCCAGGCGCTGCTGGAACACCTTGAATGTCTTGATCGGCTATGGGGCGAACAGCTAGGCAG CGAGGCGCCGTTGCTGTTGCCGGTTCGCCGTCAGCTGTCGGCGCGTTTGGCCCAGGCTACAGCCGAACCTGGCGGCGTCGCGGGCATCATTGCCCAGGTC AAGCCAGCGCGAACTGCGCTGCTAGAGCCCGAGCAACCGCTCAATAACGAAAAAGACGCGCACAAACGGCTGCGCGCATTGCAGGAGCAGGCTCGGCCTT TATGTGCCTGGTGGTTGCGTCAGGATGCAACCGACCCGCGTGCCTTGCGCCTGGGCCGAACCCTGGCGTGGTTGATGCTCGTCAATTATCCCGATGCCAA TAGTGAGCGGGTCACGGCGCTGCGCCCATTGGCTGGCGACAAGCGCAAGCGCTATCAAGACCGCTTCAGCCAAGGCCATTACGCCGATCTGTTGCTTGAG CTTGAGGTCAGCCTGGCCGGTGCGATGTTCTGGTTCGATGGGTTGCGCATGGTCTGGGAGTGCTTGGAGGCCTTGCACGCAGAGCTGGCCATGACCGAAC TGGAAATGCAATTCGCTCTGCTGCTGCATCGCCTGCCGAACCTGCCTGAGTATCGGTTCGAGGACGGCACGCCCTTTGCTGACCCCGCGACAGGTGAGTG GATCGCGCTTCACGTGATGCGTCACGTACGCAAGCCTGAGCCCTCCAGTGTTGTCGTCGACAGCGTCGCCCAGCCTTGGGAAGCGGCGTTGCAAGCGGTG ATGCCTTGCCTGCGCAAGGACGGCCTCAAGGTTGCAGTGGGTGTGCTCAAGCAAGGGCTGCGGGCGGCGTGCGGTGATCGAGCGCGCTTTCATTGGCACC TGGCGCTGGCCAGGTTGTGTGTGGCGGCCGGCAAGCATGACCTGGCCAGGATCCAGTTGGAACAACTCGACCTGCAGTTACAGCGCACGGGCCTGGAAAG TTGGGAGCCGGAGCTGGCCGTGCAAGTCGGCCAGCTGCTGTATCGCTGCTACGACCTGTTGCCACAAAACCAATCCGTACAAGACGCAAAAGACACCCTG CATCGCCGGTTGTGCCATTTCGACCTGGAAGCAGTACTTGAATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCCTCATCAAAAAGGAAAAGCACCATGGCCAAAGACGGTTCGGTAGCCCCAAAGGAACGCATCAACATTACCTTCAAACCCGCCGTCGGTGGCGCTCAG GAAGACGTCGAACTGCCGTTGAAGCTGCTGGTGCTGGGGGATTTTTCCCTGCGCCCGGACCCGCGCAAACTTGAAGATCGCAAGCCCATCGGCATCGACA AGCACACCTTTGACGAGGTGTTGGCCAAGCAAGCATTGAGCCTGACGCTGAGCGTGCCCAACCGCCTCCAGGAGGCAACCGACGTGGAAGAGTTGCCGGT CCTGGTGCGGATCAGCGCGATGAAGGACTTCAACCCCGCGAACCTGGTGGAACAGATTCCGCAATTGCAAAAGCTGATGGCTTTGCGTGAGGCGTTGGTG GCGCTCAAGGGGCCGCTGGGTAATACGCCCAGCTTTCGCAACGCTATCGAGCGGACGCTGGCCAATGGCGACTCGCGCGCACGAGTGCTCGCCGAATTGG
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| Amino Acid Sequence |
>type VI secretion protein ImpA
MVYSEKQYTYYLELARTACSPSSFVGSDMRYSSEFEVLETELGKAHSIHGAGLPDWQKISEISECILREHSKDLRVAAWLAWALYQRDSFAGLLAGLGVL RELCEHHWAQVYPVKLRTRIAAFGWLVSRLEQACAHDVSLEDQRPLCQALLEHLECLDRLWGEQLGSEAPLLLPVRRQLSARLAQATAEPGGVAGIIAQV KPARTALLEPEQPLNNEKDAHKRLRALQEQARPLCAWWLRQDATDPRALRLGRTLAWLMLVNYPDANSERVTALRPLAGDKRKRYQDRFSQGHYADLLLE LEVSLAGAMFWFDGLRMVWECLEALHAELAMTELEMQFALLLHRLPNLPEYRFEDGTPFADPATGEWIALHVMRHVRKPEPSSVVVDSVAQPWEAALQAV MPCLRKDGLKVAVGVLKQGLRAACGDRARFHWHLALARLCVAAGKHDLARIQLEQLDLQLQRTGLESWEPELAVQVGQLLYRCYDLLPQNQSVQDAKDTL HRRLCHFDLEAVLE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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