Pseudomonas putida BIRD-1, PPUBIRD1_0622 (pbpC)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0009252	peptidoglycan biosynthetic process	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02073	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0008955	peptidoglycan glycosyltransferase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02073	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0008658	penicillin binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00905	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
MetaCyc		peptidoglycan biosynthesis IV (Enterococcus faecium)	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion
MetaCyc		peptidoglycan biosynthesis V (β-lactam resistance)	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion
MetaCyc		peptidoglycan biosynthesis II (staphylococci)	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion
MetaCyc		peptidoglycan biosynthesis III (mycobacteria)	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion
KEGG	ppb00550	Peptidoglycan biosynthesis	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
FunFam	G3DSA:3.40.710.10:FF:000021	Penicillin-binding protein 1C	-	-	242	588	0.0
Pfam	PF00905	Penicillin binding protein transpeptidase domain	IPR001460	Penicillin-binding protein, transpeptidase	294	411	8.9E-8
NCBIfam	TIGR02073	JCVI: penicillin-binding protein 1C	IPR011815	Penicillin-binding protein 1C	32	769	0.0
PANTHER	PTHR32282	BINDING PROTEIN TRANSPEPTIDASE, PUTATIVE-RELATED	-	-	34	569	8.2E-128
Pfam	PF00912	Transglycosylase	IPR001264	Glycosyl transferase, family 51	52	217	9.2E-50
Pfam	PF06832	Penicillin-Binding Protein C-terminus Family	IPR009647	Penicillin-binding, C-terminal	681	767	4.6E-16
Gene3D	G3DSA:1.10.3810.10	-	IPR036950	Penicillin binding protein transglycosylase domain	46	241	1.4E-55
SUPERFAMILY	SSF56601	beta-lactamase/transpeptidase-like	IPR012338	Beta-lactamase/transpeptidase-like	199	633	1.25E-89
Gene3D	G3DSA:3.40.710.10	-	IPR012338	Beta-lactamase/transpeptidase-like	258	581	1.7E-60
SUPERFAMILY	SSF53955	Lysozyme-like	IPR023346	Lysozyme-like domain superfamily	32	249	4.22E-64
FunFam	G3DSA:1.10.3810.10:FF:000006	Penicillin-binding protein 1C	-	-	47	241	3.0E-101

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.