Pseudomonas sp. Eur1 9.41, CD10_RS0113965
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. Eur1 9.41 CD10DRAFT_unitig_0_quiver.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGCTTCCCGCGACCGTCTGCAACCGTCCCTGCTGGACCGGTTGACCGACGACGACCCGACCAACCCCAAGGAAAGCGCGGACAAACGCGTGCTGTCCC TGACCCAATTGAAGGCCTCGGTGCTGCGTGACTTGGCGTGGTTGCTTAACACCACCTCGTTACTCGATACCGATGCCACGCTGCACACCCCGGCCGGCAC CTCGGTGGTCAATTACGGCCTGCCGGCACTGGCGGGCAACAGCGCTTCGAGCGTCGATATCAAAGCCCTGGAAGCCTTGATTTACCAGGCCATCGCCACT TTCGAGCCACGTATTTTGCGCCATACATTGCGGGTCAAGGCGCGCATGGGCCATGGCGAGATGAATCACAACGCCCTGAGTTTCGAGATTGAAGGCGACC TGTGGGCACAGCCGGTACCGTTGCGTTTGCTGTTGCAGACCGACGTGGACCTGGAGTCCGGCCATGTGCGCGTGCTCAATGCCGACCAGCGGAGACGCCC
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| DNA Sequence for Gene |
>CD10_RS0113965
ATGAACCCGCGCCTGCTGGAGCTGTACAACCAGGAACTGCACCACGTGCGCGAAAGCGCCGCCGAGTTCGCCAAGGAATACCCCAAGATCGCCAGTCGGC TGACCCTGTCCGGTATGGACTGCGCCGACCCGTACGTCGAACGTTTGCTTGAAGGCTTCGCCTATCTCACCGCCCGCGTGCAGCTCAAGCTCGACGCCGA GTACCCGACCTTCACTCACAACTTGCTGGAAATCGCCTACCCGCACTACCTGGCGCCGACACCGTCGATGACCGTGGTGCAATTGCAGACCGACCCCGAT GAAGGCTCCCTGGCTGGCGGTTTCCCGCTGCCCCGGGACACGGTACTACGTGCCGCCCTGGGCCGTGAAACCCAGACCTGCTGCGAGTACCGCACCGCGC ACCCCGTGACGCTGTGGCCGTTGCAGGTCAGCAACGCCGAATATTTCGGCAACCCCGCCGCCGTGCTCGGCCGCCTGGCCGCCAGCGAGCCGAAAGCCAA GGCCGGTCTGCGCCTGACCCTGCGCACCGGTGCCGAGCTGCCGTTCAACAGCCTCGACCTGGACACCTTGCCGCTGTACCTGAGCGGCGCAGATGAACAA CCGTTTCGCCTCTACGAACAACTGCTGGGCAATGCCTGCGCGGTGTTTGCGCGCCAGCCCGGTGGCGATTGGGTCGAGCGCCTGCCCCAAGGCGCGTTGC GCTCGCGGGGCTTCGACGATGCCGATGCCGCCATGCCGGTGGTGGCGCGGGCGTTCCAGGGCTATCGCCTGTTGCAGGAGTACTTTGCCCTGCCCCATCG CTTCCTGTTCGTTGAATTTGCCGAGTTGAGCCGTGCGGTCAAACGCTGTGACGCCCAGGAGCTGGAACTGATCGTACTGTTCGACCGCCACGAGCCGAGC CTGGAAGGCAGCGTCGGCGCAGCGCAGTTCTTGCCGTTCTGCACACCCGCCATCAACCTGTTCCCCAAGCGCGTGGACCGCATCCACTTGTCCGATCGGG TCAATGAACACCATGTGATCGCCGACCGTACCCGGCCAATGGATTTCGAGATTCATTCCTTGAGCGGCATCACTGGCCATGGCACCGGGCCGGAGCAGCC GTTCTTGCCGTTCTATGCCGTGCGCGATCCGTCGCGCTATGGCCGCGACCAGGCCTATTACAGCGTGCGCCGCGAGCCGCGGGTGCTGTCCAGCGACCAA CGCCGCAATGGCCCGCGCTCCACTTATGTGGGCAGCGAAACCTTCGTCAGCCTGGTGGACAGCCGCCAGGCGCCGTATCGCCATGACCTGCGCCAGTTGG GCGTGACGGCGCTGTGCACCAACCGCGACCTGCCGCTGTTCATGAGCGTGGGCAATGGCAAGACCGACTTCACCCTGGCCGACAGTGCGCCGGTGCTGGC CGTGCGGTGCGTGGCGGGGCCAAGCCGCCCGCGTGCCAGCCATGCGCATGACGCCAAGGCCTGGCGCCTGATCAGCCAGCTGTCGCTCAACTACCTGTCC TTGAGCGAACAAGGCCAGGGCGCCGGCGCCTTGCGTGAACTGCTGCGCCTGTACGGCGACAGCAATGACGCCGCCCTGCAATTGCAGATCGAAGGCCTGC GCGAAGTCAGCAGCAAGGCGGTGACTCGACGCCTGCCGATGCCTGGCCCGATTGTGTTTGGGCGCGGCCTGGAAATCACCTTGGAGTTCGATGAAAACGC GTTTCGCGGCACCGGCGTGTTCCTGCTCGGTGCGGTGCTGGAGCGCTTCCTGGCACGCTACGTGTCGATCAACAGCTTTACCGAGACGGTGATCCGTACC ACCGAACGCGGCGAGATCATGCGATGGAAAGCCAAGCCCGGACGGCGTCCGACCCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACCCTGGACGCGATGCACCAGGAGCCCTGGGAATATGACTTCTTCCAGGCATTGCGGCGCATCGAGTGCGAAACGCCCGAGCTGCCACGCCTGGGCCA TTCCCTGCGCCTGGCCGATGATCCGCTGCGCCTGGGGCAGCAGGCCGATTGCACCTTCGCACCCGCCACCCTCGCCTCGGTCGACCCGGGAGGCGATGGC AAGCCGGCGCGGCTGGAGCAGTTCTTCTTCGGCCTCGGCGGCCCCAACGGCCCGCTGCCGCTGCACATCACCGAGTACGTACGCGAGCGCCAACGCAACA ACGCCGACAGCACCAGCAAGCAGTTCCTGGATGTGTTCCACCATCGCCTGCTGACTCTGTTCTATCGGGCCTGGGCCGAGGCGCGGCCTACCGTCAGCCA CGACCGCCCGGACGATGACTACTGGTCCGCCCGCCTCGCCGCCCTGAGTGGCCGTGGGATGCCGAGCCTGCTCAATCAAGGGCTGATCCCCGATACCGCG
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| Amino Acid Sequence |
>type VI secretion system protein ImpG
MNPRLLELYNQELHHVRESAAEFAKEYPKIASRLTLSGMDCADPYVERLLEGFAYLTARVQLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLQTDPD EGSLAGGFPLPRDTVLRAALGRETQTCCEYRTAHPVTLWPLQVSNAEYFGNPAAVLGRLAASEPKAKAGLRLTLRTGAELPFNSLDLDTLPLYLSGADEQ PFRLYEQLLGNACAVFARQPGGDWVERLPQGALRSRGFDDADAAMPVVARAFQGYRLLQEYFALPHRFLFVEFAELSRAVKRCDAQELELIVLFDRHEPS LEGSVGAAQFLPFCTPAINLFPKRVDRIHLSDRVNEHHVIADRTRPMDFEIHSLSGITGHGTGPEQPFLPFYAVRDPSRYGRDQAYYSVRREPRVLSSDQ RRNGPRSTYVGSETFVSLVDSRQAPYRHDLRQLGVTALCTNRDLPLFMSVGNGKTDFTLADSAPVLAVRCVAGPSRPRASHAHDAKAWRLISQLSLNYLS LSEQGQGAGALRELLRLYGDSNDAALQLQIEGLREVSSKAVTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVLERFLARYVSINSFTETVIRT TERGEIMRWKAKPGRRPTL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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