Pseudomonas sp. Eur1 9.41, CD10_RS0110080
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. Eur1 9.41 CD10DRAFT_unitig_0_quiver.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGGCAGCGATACCATCACCATCGAGTACAAGGAATTCGGCATTCGCCTGACCCTCACGCCAACGGTCATCGACCACAACCGCATCGCCTTGAAAGTCG CCCCGGAAGTCAGCGAGCTGGATTACAACAACGCGATCCGGATCCAGGGCATCCAGGTACCCGCACTCACCGTCCGGCGCACCGACACCAGCGTGTCGCT AGCCGACGGCGAAAGCTTCGTGATCAGCGGCCTGATCAGCAGCACCAACCGCTCCACCATCGCCAAGCTGCCGGGCCTGGGCGACATCCCGATCATTGGT GCTTTCTTCCGCGACTCCAATATCAACAGTGAAGAAAAAGAACTGCTGATGATTGTCACGCCGCATCTGGTGCAGCCACTGGCCGCCAATGCGCAGTTGC CGTCGCTGCCCGGCGAGAAACTGCGCACCTACGACCCGAATTGGTTCCGCCTGTTCTTCCTGGAAAACGGCAACTTCGACCGTCGCAGTGGACTTTCCCA
|
|
| DNA Sequence for Gene |
>CD10_RS0110080
ATGAGCGATAGCCTGAGCCAGACCTTCCTGGCAATCACCCGCAACAGCACCGACCTGGAATGGCTCCAGGGCGCGCTGGCGCCCCTTGGCCAAGTGATCA GCGTGGGCGGCGGCAGCCTCGATGAATTGCTGGCACTGGTGGACGTGACCTTTGCCAACCTGGTGTTCGTGGGCCTGGACCGTGAACACCTGGTGGCCCA GAGCGCCTTGATCGAAGGCGCTCTGGAAGCCAAGCCGATGCTGGCGGTGGTGGCCTTGGGCGACGGCATGGATAACCAGTTGGTACTCAACGCCATGCGT GCCGGCGCCCGGGATTTTGTCGCCTATGGCTCGCGCTCCAGCGAAGTGGCCGGGCTGGTACGGCGCTTGAGCAAGCGCTTGCCACCCACCGCACCAAACG CTCATCTCGGCGGCCTCACCGTGCTCTACGGCGCCCAGGGCAATACCGATGGCGCCCTGCTGGCGAGCCACCTAGCGATGGTGGTGCAAAAGAGTGGCCA GCAGACGCTGATGCTCGACCTCGGCCTGCCCAGGGGCGACAGCCTGGCGCTGCTGGGCCTGGACAGCACCTTCAATTTCGGCGACGCCTTGCGCCACCTG CGCCGCCTGGACGCCACCCTGATCAACAGCGCGTTCACCAGCACCGACGACGGCCTGCGCATCCTCGCCTACGCCGCCAGCGATGAGCCCCTGGAAATGA CCAGCGCCGCCGAGCTGTACATGTTGCTCAGCGCCTTGCGCCAGCACTTCCAGCACATCGTGGTCAACCTCACCGGGCAAGCCGACAGCGAAGCCCTGCG CACCTTTGTCAGCCACTGCGACAAGTTGCTGTGGTGCACCGACCAGGGCGTGCTCGACTGTCGGCGCAACCTGGCGGTGCTGAACCTGTGGCGCGAAAAA GGCATGAAGCTCGACCATGCCAAGCTGCTCGTCGATCGCTACATCAAAGGCTGCGCCCCCGACACTGAAGCCCTGGAAAAAAGCTTCGGCCTGGAGTGCA TCGCCGTGCTGCCCCTGAGCCCAGAAGTGCGCCTGAACGCCAAAAACCAGGGGCAAAGCCTGTTCACCCTGGCCCCACGCGAAGCCTTGACCCAAGCCCT GCGCCACCTGGGCGAGCGCCTGGCCAAACGTACCGAAGGCTTGGATAAACCTTCGACACGCTGGTTCGAACGCCTGCTGGGGACGAGTCGATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACAGCGAAAAACTCTTCGGCGCCCCGGCCCGTGGGGCTACCGCGCACAACGACCACGACGGCCTGAAACTGGTGCTGCATCGCTACATCATCGATGCCAT CGAAGAGTCGGGCCAGAACCTGCTGGAAGGCTCGCGCCAATCCCTGGCGCAATTTGTCATCGACAAAGTGGCCGAGTACATCACACGCATGCACCTGGCG ATCTCGCGCTATGAGATGGAGCGCCTGGCCGAGGAAATCGTCGATGAGCTGACCGGCTTCGGCCCGCTGGAAGTGCTGCTGCGCGATGTGTCGGTTACCG AAATTTTGGTCAATGGCCCGCACCGGGTGTTTATCGAGCGTGACGGGGTGCTTCACCAGAGCGACCTGCGTTTTATCGATGCGCACCATGTAGAACGCGT GATGCAGCGCATTCTCGCGCCCCTCGGAAGGCGCCTGGATGAGTCGTCGCCGATGGTCGATGCGCGCTTGCCCGATGGCAGCCGGGTCAATGCGATCATC
|
|
| Amino Acid Sequence |
>pilus assembly protein
MSDSLSQTFLAITRNSTDLEWLQGALAPLGQVISVGGGSLDELLALVDVTFANLVFVGLDREHLVAQSALIEGALEAKPMLAVVALGDGMDNQLVLNAMR AGARDFVAYGSRSSEVAGLVRRLSKRLPPTAPNAHLGGLTVLYGAQGNTDGALLASHLAMVVQKSGQQTLMLDLGLPRGDSLALLGLDSTFNFGDALRHL RRLDATLINSAFTSTDDGLRILAYAASDEPLEMTSAAELYMLLSALRQHFQHIVVNLTGQADSEALRTFVSHCDKLLWCTDQGVLDCRRNLAVLNLWREK GMKLDHAKLLVDRYIKGCAPDTEALEKSFGLECIAVLPLSPEVRLNAKNQGQSLFTLAPREALTQALRHLGERLAKRTEGLDKPSTRWFERLLGTSR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|