Pseudomonas putida BIRD-1, PPUBIRD1_0077 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida BIRD-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGTCTTCGAGCGAACCCTGAGCGAACTGGTCGAGCTGGACGGGTTGACCCTGAGCTACTACCGAGGTTGGGACAAGGACCGGGAACTGCAAGAAGTACTC GCCTCCTCCCTCCTTCGCGATCAGCAGATGGGCCATACCCAAGCCGGTCCGCAGCGTGCTGATCTGCGTTTGCGGTTGGCTGGCAACAACGCAGCCGACA TCTTGTCGCGTGGTCAGCAAAAGTTGGTGGTATGCGCATTGCGCATTGCCCAAGGCCACCTCGTTAGTCAGGCTCGCCGCGGTCACTGTATTTATCTCGT GGATGACTTGCCGTCCGAACTGGATGACCAGCATCGCCGCGCACTATGCCGCTTGCTTGAAGAATTACACTGCCAGGTGTTCATCACCTGTGTAGATCAC GAATTACTGAGGGAAGGCTGGCAGACGGAAACGCCAGTTGCTTTGTTCCACGTGGAACAAGGCCGTATCACCCAGACCCACGACCATCGGGAGTGAAGGC
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| DNA Sequence for Gene |
>PPUBIRD1_0077
|gyrB
ATGAGCGAAAATCAAACGTACGACTCCTCCAGCATCAAAGTGCTGAAAGGTTTGGATGCCGTACGCAAGCGTCCCGGCATGTACATTGGCGACACCGATG ATGGTAGTGGCCTGCACCACATGGTCTTCGAAGTGGTCGACAACTCGATCGACGAAGCCCTCGCCGGTCACTGCGATGACATCACTGTCATCATCCACCC GGACGAATCTATCAGTGTGCGCGACAACGGTCGCGGCATTCCGGTCGATGTGCATAAGGAAGAAGGCGTTTCCGCAGCCGAGGTCATCATGACTGTGCTG CACGCCGGCGGTAAGTTCGACGACAACTCCTACAAAGTATCTGGCGGTCTGCACGGTGTCGGTGTGTCGGTTGTGAACGCCCTGTCCGAGAAGCTGGTTC TGACCGTTCGCCGTAGCGGCAAGATCTGGGAACAGACTTACGTTCACGGTGTTCCACAAGCGCCCATGGCGGTTGTCGGTGACAGTGAAACCACGGGTAC CCACATCCACTTCAAGCCATCGGCTGAAACCTTCAAGAACATTCACTTCAGCTGGGACATCCTGGCCAAGCGCATCCGCGAGCTGTCGTTCCTCAACTCG GGCGTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTCAAGTACGAAGGCGGTCTGCGTGCGTTCGTCGAGTACTTGAACACCAACA AGACGCCGGTCAACTCCCAGGTGTTCCACTTCAACGTTCAGCGTGACGATGGTGTGGGTGTTGAAGTCGCCCTGCAATGGAACGACAGCTTCAACGAAAA CCTGCTGTGCTTTACCAACAATATTCCGCAGCGTGATGGCGGTACCCACCTGGTGGGTTTCCGTTCCTCGCTGACCCGTAGCCTTAACAGCTACATCGAG CAGGAAGGCCTGGCCAAGAAGAACAAGGTGGCAACCACTGGCGACGACGCCCGTGAAGGCCTGACCGCAATCATCTCGGTTAAGGTACCGGACCCGAAGT TCAGCTCGCAGACCAAGGACAAGCTGGTCTCCTCGGAGGTGAAAACCGCCGTGGAGCAAGAGATGAACAAGTACTTCGCCGATTTCCTCCTGGAAAACCC GAACGAGGCGAAGGCCGTCGTTGGCAAGATGATCGACGCGGCTCGCGCTCGTGAAGCTGCACGTAAAGCTCGTGAGATGACCCGCCGTAAAGGTGCGCTG GATATCGCGGGTCTGCCGGGCAAACTGGCAGACTGCCAAGAGAAAGATCCTGCTCTCTCCGAACTGTACCTGGTGGAGGGTGACTCTGCGGGTGGCTCGG CCAAGCAAGGTCGCAACCGTCGTACCCAGGCGATCTTGCCGCTGAAGGGTAAAATCCTCAACGTCGAGAAAGCGCGCTTCGACAAGATGATTTCGTCCCA GGAAGTGGGCACGCTGATCACTGCGCTGGGCTGTGGTATCGGCCGTGAAGAGTACAACATCGACAAACTGCGTTATCACAACATCATCATCATGACCGAT GCTGACGTTGACGGTTCGCACATCCGTACGCTGCTGCTGACCTTCTTCTTCCGTCAGCTGCCGGAGCTGGTCGAGCGTGGCTACATCTATATTGCCCAGC CGCCGCTGTACAAGGTGAAACGAGGCAAGCAGGAGCAGTACATCAAGGACGATGAGGCCATGGAAGAGTACATGACCCAATCGGCGCTGGAAGATGCCAG CCTGCACCTGGACGAATCGGCACCTGCAGTTTCCGGTGTGCAGCTGGAAGCGTTGGTGAATGAGTTCCGCAGTGTCATGAAGACTCTCAAGCGCCTGTCG CGCTTGTACCCGGAAGAGCTGACTGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCAGGCCTGGCTGGCCC AGTTCCAGGCGCGTCTGAACTCCAGCCAGAAGTCTGGCCTGGCTTACAACGCCAGCCTGCGTGAAGACAAAGAGCGCAACGTGTGGCTGCCTGAAGTGGA AATTACCTCCCACGGTCTGGCCAGCTACATCACGTTCAACCGCGATTTCTTCGGCAGCAATGACTACCGTACCGTAGTCAACATTGGTGCCAAGCTTTCG AGCCTGTTGGGTGAAGGTGCGTACGTGCAGCGCGGTGAACGCCGCAAGGCAATCGTCGAGTTCAAAGAGGGCCTGGATTGGCTGATGAACGAGACCACCA AGCGCCATACGATTCAGCGATACAAAGGGCTGGGTGAGATGAACCCGGATCAACTGTGGGAAACCACCATGGACCCGACCGTTCGCCGTATGCTCAAGGT CACGATCGAAGATGCCATCGCCGCTGACCAGATCTTCAACACCCTGATGGGTGATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCG GTGTCGAACCTGGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGGTGTAATTCGCCACACACTAAGAAGCCCGCTGATGCGGGCTTTTTAGTGCCTGCAATCAATCAGTAGCCGGCCAGAATGTTCACGATCACACCGCT GGCAATGGCCACCAGCACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGTGGCGCGCTTGCCAGTCAGTTACCCAGTAA CGATCACCACGGTAATGTGGATCAACGGCATGACCACGCTGCCACTGCTTATGAGGTATCGGCATGCCTTGTTGTGGGCGGAAGTTTGGATCACGGTAAG CAGGTCCGCGGCCATTGTCATGTCGGCCCTGGTGCTGTGGTTGACCATGTGGCGGGTTGCCTTGGTGCGATGGGCCGCCATCATGCCGATCAGGCGGGCC CGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTGATGCGGTCCTCTGCCTGTTAATCGC
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| Amino Acid Sequence |
>protein GyrB
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSETTGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNS GVGILLKDERSGKEEFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIE QEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGAL DIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTD ADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVKRGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLEALVNEFRSVMKTLKRLS RLYPEELTEHFVYLPEVTLEQLGDHAVMQAWLAQFQARLNSSQKSGLAYNASLREDKERNVWLPEVEITSHGLASYITFNRDFFGSNDYRTVVNIGAKLS SLLGEGAYVQRGERRKAIVEFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIESNALS VSNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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