Pseudomonas sp. FH4, H097_RS01535
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FH4 scf_29086_110.1_contig_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGTGATGCTCAAGGTGTTGTATGGCCTGAAGAACTTCGAGGGTAAATCGAAGTTCAAAACCTGGCTCTACAGCATCACGTACAACGAGTGCATCACGC AGTATCGTAAGGAACGGCGAAAGCGTCGCTTGATGGACGCGTTGAGCCTGGACCCCCTTGAGGAGGCGTCTGAAGAAAAGACGCCGGCACCCGAGGAGAA GGGCGGGCTTGATCGCTGGTTGGTGCATGTGAACCCAATTGACCGGGAAATTCTGGTGCTACGATTTGTCGCAGAACTGGAATTTCAGGAAATTGCTGAC ATTATGCATATGGGTTTGAGTGCTACAAAAATGCGTTACAAACGTGCTCTTGATAAATTACGTGAGAAATTTGCGGGCAGTACTGAAACTTAGTTCGGTG CAAATATCTCTTACGTGTAGGCAAGTTCTGTTAGACTTGTCGCCGAGTTGTCCCCCGGTATGTGGGACTGCTTTACAATCACCAGATGGGGATTTAACGG
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| DNA Sequence for Gene |
>H097_RS01535
ATGAAACTGAAAAACACCTTGGGCTTGGCCATTGGTTCTCTTATTGCCGCTACTTCTTTCGGCGTTCTGGCACAAGGCCAAGGCGCAGTTGAAGGCGAGC TGTTCTACAAGAAGCAGTACAACGATAGCGTCAAGCACATCGAAGACGGCTTCAATCCTGGCGCTCGCATCGGTTACTTCCTGACCGACGACCTGTCCTT GAACTTGTCCTACGACAAAACCAACCACACCCGTTCGAACGACGGTACTGGCAACCAGAAGATCAAAGGTGATACCGGCAGCCTGACTGCTCAGTACCAC TTCGGTCAGGCTGGCGTCGACTCCCTGCGTCCATACGTAGAAGGTGGTTTCGGTCACCAGAGCCGTACCAACGTACTGGCTGACGGTCACAGCGGTCGCG ATCAGACCACTCAAGCCATCATCGGTACTGGTGTTAAGTACTACTTCACCAACAACCTGTACGCTCGTGCCGGTGTTGAAGCTGACTACGGTCTGGACAA CGGCAAGTGGGATTACTCCGCACTGGTCGGCCTGGGCGTAAACTTCGGCGGTAACGCTGGCGCAGCCGCTCCAGCTCCTACCCCAGCACCAGCTCCAGAG CCAGTTCCAGAGCCAGAAGCTCCGGTTGCTCAGGTTGTTCGTGTTGAGCTGGACGTTAAGTTCGACTTCGACAAGGCCGTTGTTAAGCCTAACAGCTACG GCGACGTGAAAAACCTGGCCGACTTCATGGCTCAGTACCCAGCTACCAACGTAGAAGTTGCTGGTCACACTGACTCCGTCGGTCCAGACGCTTACAACCA GAAGCTGTCCCAGCGTCGTGCTGACGCTGTTAAGCAAGTCCTGGTTAAAGACGGCGTTGACGCTGGCCGTATCACCTCCGTAGGTTACGGCGAATCCCGC CCAGTTGCTGATAACGCAACTGAAGCTGGTCGTGCTGTTAACCGTCGCGTAGAAGCATCGGTTGAAGCTCAAGCTCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTACTGAGTGGTAGAAAAAAGCCCGGCTCTTGAGCCGGGCTTTTTTTCGCCTGCGATTTACCTCAGGCGCTGGCCAACAATGCAGCTTCACCCGCTGTTG CCGCCACGGCACCGATTACCAGGATAGCCGGGCTCTTCAAGGCGAATGCCTTGGCATCATCCTGCATGCACGCCAGGGAACTGCGGCACTCACGCTGCTG GGGCAGCGAGGCATTCTCGATCATCGCCACTGGCATATCTGCAGCCATGCCACCGTCCAGCAACTGCCGGGCAATCTCTGAAAGCTTCGCCACGCCCATG TAGACCACCAGTGTCGTGCCACCCTCGGCCAAGGCCCGCCAATTGAGGCTGCTGTCGTCCTGGGTATGGGCCGTGACCAGCGTTACGCCGCGACTGATCC CGCGCAGTGTCAGCGGTATATCGCAATGGGTCGCACCTGCCAGCCCGGCGGTGATGCCATTGACCAACTCCACGCTCACGCCTCGCTCCCTGAGCCAGGT
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| Amino Acid Sequence |
>porin
MKLKNTLGLAIGSLIAATSFGVLAQGQGAVEGELFYKKQYNDSVKHIEDGFNPGARIGYFLTDDLSLNLSYDKTNHTRSNDGTGNQKIKGDTGSLTAQYH FGQAGVDSLRPYVEGGFGHQSRTNVLADGHSGRDQTTQAIIGTGVKYYFTNNLYARAGVEADYGLDNGKWDYSALVGLGVNFGGNAGAAAPAPTPAPAPE PVPEPEAPVAQVVRVELDVKFDFDKAVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSVGPDAYNQKLSQRRADAVKQVLVKDGVDAGRITSVGYGESR PVADNATEAGRAVNRRVEASVEAQAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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