Pseudomonas sp. FH4, H097_RS02550
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FH4 scf_29086_110.1_contig_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCCGATGTCAATGCCTTCAACCCCGTGTTTGACGTGACCCCTGCTGACTTGATCGACGTGATCGTGACGGAAAAAGGCATCGTCGAGCGGCCTGATAGC GCAAAGATGGCCAAGTTGATGTGCCGTAAGCGCCTGCACTAAGGGCGTTGGTGTCTGGCAGATTGCTCGCGATTGGCCCGAAAAGCCAACAAAACCCTCG GATTCATACGCAAATCCGAGCCTTGATCCAGCTCTGAGCCCCTCTCGTCGTCCTCAAGCCTGTCATCCGTCAACTTACTACGCTCCATGCGCATCTGGGG GATAGGTGCGTGGCGGCGATTGTGATACCATTCGGCGGTTTCCAAGGTCACCCCGAGGGGCGGCCTTTAATGCGCAGATCCGTGTCATAACTCGTTGATT TGTCGTAAGTCGTTGCCAGGCATCATGTCGGCGGCGGCGAGCTTCGTTTGTCCCGTATGGATGTGACGAAGTTTCACCCGAAAAAGGAATCAGGCTTCTC
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| DNA Sequence for Gene |
>H097_RS02550
ATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAGCTGAAACAGTCCTACCTCGACTACGCAATGAGCGTAATTGTCGGGCGGGCAC TGCCTGATGCGCGCGATGGCTTGAAGCCCGTGCACCGGCGTGTGCTGTTCGCGATGAGCGAGCTGGGTAACGACTGGAACAAGCCGTACAAGAAATCTGC CCGTGTTGTCGGTGACGTGATCGGTAAGTATCACCCTCACGGCGACACTGCGGTGTACGACACCATCGTTCGGATGGCCCAGCCGTTTTCCCTGCGCTAC CTGCTGGTAGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGATAATGCTGCGGCCATGCGATACACCGAAGTGCGCATGACCAAGCTGGCGCACGAAC TGCTGGCCGACCTGCATAAAGAAACCGTGGACTGGGTGCCGAACTACGACGGCACCGAAATGATCCCGGCGGTCATGCCGACCCGTATTCCCAACTTGTT GGTCAACGGCTCCAGCGGTATCGCCGTGGGCATGGCCACCAACATCCCGCCACACAACCTCGGTGAAGTCATCGACGGTTGCCTGGCCCTCATCGACAAC CCCGAGCTGACCGTCGATGAGCTGATGCAATACATCCCCGGCCCGGACTTCCCGACCGCCGCGATCATCAACGGTCGCGCCGGCATCATCGAAGCCTATC GCACCGGTCGCGGGCGCATCTATATGCGCGCCCGCTCGATGATCGAAGACATCGACAAGGTCGGTGGCCGCCAGCAGATCGTCATCACCGAACTGCCTTA CCAGTTGAACAAGGCGCGTCTGATCGAGAAGATCGCCGAGCTGGTTAAAGAGAAGAAACTGGAAGGCATCACCGAACTGCGCGACGAGTCCGACAAAGAC GGTATGCGCGTGGTGATCGAGCTGCGTCGTGGCGAAGTGCCTGAGGTGATCCTCAACAACCTCTACGCCCAGACCCAGCTGCAAAGCGTGTTTGGTATCA ACGTCGTGGCCCTGATCGACGGTCGCCCGCGCATCCTGAACCTCAAGGATCTGCTGGAAGCCTTCGTGCGTCACCGTCGCGAAGTGGTGACCCGTCGTAC CGTATTCGAGCTGCGCAAGGCTCGCGAGCGTGGGCACATCCTGGAAGGCCAGGCGGTTGCGCTGTCGAACATCGACCCGGTTATCGCCCTGATCAAGGCT TCGCCGACCCCGTCGGAAGCCAAGGAAGCACTGATCAAGATGCCGTGGGAATCCAGCGCCGTTGTGGCGATGGTTGAGCGCGCCGGTGCCGATTCGTGCC GTCCGGAGACCCTGGACCCACAATACGGCCTGCGCGACGGCAAGTATTTCCTGTCGCCGGAACAGGCCCAGGCCATCCTGGAACTGCGCCTGCACCGCCT GACCGGTCTGGAGCATGAAAAGCTGCTGGCCGAGTACCAGGAGATTCTCAACCAGATCGGTGAGTTGATCCGCATCCTCAACAGCGCTGTGCGCTTGATG GAAGTGATCCGCGAAGAACTGGAAGTGATCCGCGCCGAATATGGCGACGTGCGCCGCACCGAAATCCTCGATGCCCGCCTCGACCTGACCCTGGGTGACA TGATCCCGGAAGAAGAGCGCGTGGTGACCATTTCCCACGGTGGCTACGCCAAGACTCAGCCATTGGCTGCGTACCAGGCCCAGCGCCGTGGTGGTAAAGG TAAATCGGCTACCGGCGTCAAGGATGAGGACTACATCGCTCACCTGCTGGTTGCCAACAGCCACACCACGCTGCTGCTGTTCTCCAGCAAAGGCAAGGTG TACTGGCTCAAGACCTACGAAATCCCGGAAGCGTCCCGCGCCGCCCGTGGGCGTCCGCTGGTCAACCTGCTGCCGCTGGACACTGATGAATACATCACCA CCATGCTGCCGGTTGAGGAATACACCGAAGGTCACTTCATCTTCATGGCAACCGCCAAAGGCACCGTGAAGAAGACCCCGCTGGAATCCTTCAGTCGTCA ACGCAGCGTGGGCCTGATCGCCCTGGAGCTGGACGAAGGCGACGTACTGATCTCCGCCGCCATCACCGATGGCGAGCGTGAAGTCATGCTGTTCTCCGAC GGCGGCAAGGTGACGCGCTTCAAGGAATCCGACGTGCGTGCCATGGGCCGTACCGCCCGTGGTGTGCGTGGCATGCGTTTGCCGGAAGGGCAGAAGCTGA TTTCCATGCTGATCCCGGAAGAAGGCAGCCAGATCCTCACGGCTTCGGCGCGTGGTTATGGCAAGCGTACCGCTATTGGCGAGTTCCCCGAGTACAAGCG TGGCGGCCAGGGCGTTATCGCCATGGTCAGCAATGATCGCAACGGCCGTCTGGTTGGCGCGGTCCAGGTGCTCGATGGCGAGGAAATCATGTTGATTTCC GACCAGGGCACCCTGGTGCGTACCCGGGTTGATGAAGTGTCGAGCCTGGGTCGTAACACCCAGGGCGTGACCTTGATCAAGCTGGCCAGCGACGAGACCC TGGTGGGCCTGGAGCGTGTCCAGGAACCGTCGGAAGTCGAAGGTGAGGAGCTGGAGGGTGAGGCATTCGATGGCGAGGTGATCGCAGCCGGCGATGACAA CGTCGACGAGCCAACCCTCGATGCCGCCGCAGACGAAGAAGAGCCGCAGGCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGACAAACAAGGGGGCGGATGAAGATTCGCCCCCTTGTTATTTGTCCCTTTTGAAAGTTTGCGATACTGCGCATTCCCCTGTGGGAGAGGTCTTGCAG GGGTTATGTGTCGAACACGAATTATGTGACCAACAGATCAGAGCGAGATTGGATGTGAGCAAGAGAGCCTATAACTTCTGTGCTGGTCCCGCGGCACTTC CTGAAGCGGTCCTGCAGCGCGCGCAGGGTGAACTCCTCGACTGGCATGGCAAAGGCCTCTCCGTGATGGAAATGAGCCATCGCAGTGATGAGTTCGTGTC CATTGCCACCAAGGCCGAGCAGGATCTGCGTGACCTGCTGGACATCCCGTCGGACTACAAGGTGCTGTTCCTGCAAGGCGGCGCCAGCCAGCAGTTCGCC CAGATCCCGCTGAACCTGCTGCCGGAAGACGGCACTGCCGACTATATCGATACCGGTATCTGGGGGCAGAAGGCCATTGAAGAGGCCTCGCGCTACGGCA
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| Amino Acid Sequence |
>DNA gyrase subunit A
MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRY LLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLALIDN PELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRARSMIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKD GMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALIDGRPRILNLKDLLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKA SPTPSEAKEALIKMPWESSAVVAMVERAGADSCRPETLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGELIRILNSAVRLM EVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV YWLKTYEIPEASRAARGRPLVNLLPLDTDEYITTMLPVEEYTEGHFIFMATAKGTVKKTPLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSD GGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLISMLIPEEGSQILTASARGYGKRTAIGEFPEYKRGGQGVIAMVSNDRNGRLVGAVQVLDGEEIMLIS DQGTLVRTRVDEVSSLGRNTQGVTLIKLASDETLVGLERVQEPSEVEGEELEGEAFDGEVIAAGDDNVDEPTLDAAADEEEPQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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