Pseudomonas sp. FH4, H097_RS03205
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FH4 scf_29086_60.1_contig_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTCCTCGCGGCCGGGCAGGGGGGTCAAGCTTTGGCCTGCGCAGGGGCCGGCGACGCATTCGCCGTTTTCGATCAGAAACAATGCGCCATGGGTGGCAC ATTGGATCATGCTCGCGCTAGGGTCGAGAAACCGGTCAGGTTGCCATTCCAGCGGTACGCCGCGATGAGGGCAACGGTTGATATAGAAATACACCCGGCC TTCGCGGCGTACGGCAAACAGCTTGCGGCCATCGAGATCGAAGCCGCGGCTGCTGTCTTGGGCAAGTTCGTGGGACGGGCACAGAAACTTCATGAGTGTT CTCAGGTGGTGCGGGTCAAGGGCTGCAGGGCGAACCAGGGTTTATGGGCGAGCCTGGCGCTTGACGTTCAAATGCAAACAATTATCAAATGCCGGCTTCG CCCGTTAGCTGACTGCGTGCTCAGTACGATGCCAGACCGCCAGGATCTGTCACACGATTGAGTGATTCAGTGGCTCCACCCCTTGGAAGGAAACCCTTTT
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| DNA Sequence for Gene |
>H097_RS03205
ATGCGCCTGAGTACCAGCGCTATTGCGCTTGTTGTCGGACTGCTGGTCAACCACGGGGCACAAGCCTCTGAGCTGCCACAACGCTGGGTCAGTGCAGGCG GTGCATTGTCGGAGTGGGTGACGGCCCTGGGTGGGGAGTCCAAACTGGTGGGTGTCGACACCACCAGTCAGCATCCGCAATCACTCAAGGCACTGCCCAG TATCGGTTACCAGCGCCAACTGTCGGCCGAAGGGATCTTGAGCCTGCGCCCGCAAATCCTGGTGGGCACCGAGGAAATGGGGCCGCCGCCGGTGCTGGCG CAGATTCGTGGTGCAGGCGTGCAAGTGGAGCTGTTCTCCGCGCAGCCGGATTTGCCGACCCTGCAAGGCAACCTGCAACATCTTGGCAAACTGTTGGGGG CCGAAGCCAAGGCTGCGGCACTGTTCAACACCTATCAGCAGCAACTGGACGAGCAGAAAGCGGCTGTGGCCCAGGCGCAAACCCGGCAAAAGGCCCCAGG TGTGCTGCTGGTGCTCGGGCATGCCGGTGGCAAACCACTGATCGCCGGCAAGGACACTGCCGCCGATTGGGTGCTGCAACAAGCCGGTGGGCACAACCTG GCGACGCACAGTGGCTACAAGCCATTTTCCGTAGAGTCCCTGGCGGGGCTGAGTCCTGAAGTGCTGGTGTTCTCTGATCGCGCCCTGAGTGGCGAGGCAG CCCGCGCGGCCTTGTTCAAGGAAAACCCGATTCTGGCAGCCACTTCTGCGGCCAAGACCGGGCGAGTCTTTGAGTTGGACCCCACCTTGTTGGTCGGTGG CCTGGGGCCGCGTTTGCCGGCCAGCCTGCAAGCCTTGTCCGCCGGGTTCTATCCGCCTAAAACCCAAGCTGCCCCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCACTCTGGTTAAACCGCGCGCGCTGTTCATCGGCTTGAGCCTGTTATGTGTATTGGCGATCTGGCTGTCCCTGGCTTTGGGGCCGGTCAGCCTGCCATT GCTCGACACCTTGCGCGCCGCCTTGCGTTTGCTTGGCGTGCCCATCGAGGCCCAGGGGTTGGAGCAGGCCGAGTTGATTCTCGGGCAGATCCGTTTACCG CGCACCTTGTTGGGGCTGGCGGTCGGCGGGGTGCTGGCGCTGTCGGGGGTGGCGATGCAGGGGTTGTTCCGCAACCCGTTGGCCGACCCGGGTTTGGTCG GCGTGTCCAGTGGCGCCGCGCTGGGGGCGGCGGTGGCCATCGTCGGTGGCGCGGCCTTCGGTGGCCTGCCGGATGCCGTGGGGCCGTATCTGCTGTCGTT GTGTGCGTTTCTCGGCGGGCTGGGTGTGACTGCGCTGGTCTATCGCCTGGGACGACGTGACGGCCAGACCAATGTCGCAACCATGCTGTTGGCCGGCATC
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| Amino Acid Sequence |
>ABC transporter substrate-binding protein
MRLSTSAIALVVGLLVNHGAQASELPQRWVSAGGALSEWVTALGGESKLVGVDTTSQHPQSLKALPSIGYQRQLSAEGILSLRPQILVGTEEMGPPPVLA QIRGAGVQVELFSAQPDLPTLQGNLQHLGKLLGAEAKAAALFNTYQQQLDEQKAAVAQAQTRQKAPGVLLVLGHAGGKPLIAGKDTAADWVLQQAGGHNL ATHSGYKPFSVESLAGLSPEVLVFSDRALSGEAARAALFKENPILAATSAAKTGRVFELDPTLLVGGLGPRLPASLQALSAGFYPPKTQAAP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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