Pseudomonas sp. FH4, H097_RS09775
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FH4 scf_29086_26.1_contig_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCTCAGGTAGTCCAGGCGCGGAATGATCGCGTCCGAGCGGATCTTCACCTGTGGCACCTTGCCCCCGAGCGAGCTGATATCCAGCTTCGTGGCTTCATA GTGGTTGTAGTAGAGGTTGAAGGCGAACATGTGGTCCGGCAGGTGATCGACATCCAGTGGCAGGATGTAGAAGCCGTCGGTACCTGTACCGATATTGTCC ACGCCGCCTTCTGTGGCCAGGGTCGACAGGCTGATAAGGGCCAGGGCAAGGGGGAAGGGGGCAAGCGCGCGGGTCGGGTTCATGTCTGGGCTCATTATTA TTGTTAGAGGGCCGGCCCTCATTGGAGCCGTGCCCATAGAAATAAGCCCTTGGCGCCCCAGAGGGCAGGGTATTGGCGGCCACATAGGGGGGCTTTGCCG GACACTGTTCATTCAGAGTGCGGCGAAGCTTGCAAGCACCTATGATTATCAGGATGTTTCTAAAACAATAACCGGGCATAGAGTCGGGAATCGCAGATCC
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| DNA Sequence for Gene |
>H097_RS09775
ATGCACAGCAAAACCGTTGATCCACACTACGAATTGGCGCTGGTGTCACCGTTTCTCCTGCAAACCCTGGGGCAAGTCGTCGCACAAAAGGGCGCCAGTG CCGAGCATCTGTGCCGTGGCCTGGGGTTTACCCTGGCGGACCTGGACGATCCGGCACTGCGAATTTCCTATCGCCAGGCCGTGGCGATGATCCAGCGCGC ACTCAAGGTCCTGCCTGACCAGGGGTTGGGCCTGTGTGTCGGCAATCAGAATGTGCTGGGCACCCTGGGCCTGCTGGGGCATGTCATCTCGTTGTGCAAG ACCCTGCGCGATGCGTTTGCCGTGGGCGAGCGGCACCAACACACCTCCGGCGGTATCGCCACCTCACGGACCCATGAAAGCACCCAGGAGGTCATGGTCG AGGTTGAATGTCTGTTGCCTTATGCCGAGGTTCAGGTGTTTGCCGCCGAGGAGTTCTTTGCCAGCCTCATGGTCTACGGCCGCACACTGGTGGGCAGCGA ATTCAAGCCATTGCGCATGGAGTTCATGCACGCGCCGCCGTTGTATGCCGCCGAGTATCAACGTTTGTTCGGTGACGATGTGCGCTTTGGCTGCCTGCAC AACCGTATGGTCCTGGAGGCACGCTGGCTGGACGTGTCCCTGCCGAATCACCATGCCCTGGCATTGCGTCAGGCCCTTGGCCTGCTGGAGTTGGAAAGTG CCCAGCTACACCGGAAAATGGACCTGATCCAGGCGGTAGAGCGTGCTATTTCCCGCGACTTGCAGGGCAGTCAATTGGAAAAGGTCGCCAGTGACCTGAA CATGAGCGGGCGCACACTGCGCCGGCGCCTGACCGACCACGGGCTGACATTCGAGGCGTTGCTGGAACAGGCTCGTCGCGCCCGGACCATGGGGTTGTTG AGTAACCCTGGCCTGTCCATCGAGCGTATTACCCAAGAGGTGGGCTACAGTGACGTACGCAGCTTTCGCCGGGCGTTCAAGCGGTGGACAGGGCTCAGTC CCAGTGCGTTTCGCAGTGTGGGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCCCAGTGTCAAACCCTGGACCATCACTACTGACCCGTTGCAAGCGGCAATTCAGTGTGAACACTCTGTGGTGGGACACCGGTTCACTGACCGCGGCGG TTAAGGAGAACCGTCAGCCAGGCCATGGAGCTGACAGTATTCATCCCACGCCAGGCCTGCCATTTGGGCCACTTCCTTATGCACTTCCAGGCGGTTGGCC TCGAACTCCTGTGGCGACTGGCTGATCAGTTGCAGCGTCAACTCCCAGGCAAACAGGTTCTGGGACTCTGCCTGCGCCTCGAAGGCTTCGTGCAGGCGTT CGGCACGGTATTGCGCCATGGTTTCGCGCTTGGCCTGGGCGGCCAGAGGGTTCAGCGTATCCAGTTCGGCGCGCAACTCGGGATGCTGGCTCAAGAAGAT GTCCAGGGCCAGCCGATGATTTTCGCCAGGTTCAGACAAGGGGTTACTCCCGGAGCATAGGTTGCGCGACCTCAGGATGAGGTTTGTTCGTAACGGCTTT
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| Amino Acid Sequence |
>AraC family transcriptional regulator
MHSKTVDPHYELALVSPFLLQTLGQVVAQKGASAEHLCRGLGFTLADLDDPALRISYRQAVAMIQRALKVLPDQGLGLCVGNQNVLGTLGLLGHVISLCK TLRDAFAVGERHQHTSGGIATSRTHESTQEVMVEVECLLPYAEVQVFAAEEFFASLMVYGRTLVGSEFKPLRMEFMHAPPLYAAEYQRLFGDDVRFGCLH NRMVLEARWLDVSLPNHHALALRQALGLLELESAQLHRKMDLIQAVERAISRDLQGSQLEKVASDLNMSGRTLRRRLTDHGLTFEALLEQARRARTMGLL SNPGLSIERITQEVGYSDVRSFRRAFKRWTGLSPSAFRSVG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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