Pseudomonas sp. FH4, H097_RS16145
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FH4 scf_29086_16.1_contig_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGTTCCTGCGCTCGGAAGGCGCTAACCCTGAGCCCACGTCCCAGATCATCGTGCCGGCCCTGCGCCTGCTCAGCGTGGGCGATAACCTCGGCCCGACC AACGATGGCAAGCCCGCCGTGGCGCCGCCCACCACCGATGAAGAAAAAGCCCGTCAGGTACAACGCCAGGCAAACCCGCCACGCACCGTGGTGTTGGCGG TGCCGGAACAGTTGATGAGCCGCCTGATGCTGGCCACCAGCGTCGGCGCCTTGCGCCTGGCCGTACGCAGTGCCGATGAACAGTTGCTGAGCCAGTACTG GGCCGGGGATAACGAGGCGTCGGCCAATCTGCAAAGCGCCAATCGCGACCTGTACCAGTTCACTCAACTGGCCATGGTCGCCGCGCCGAAAAGAGTTGCA CAAGCCGGGGCCACCAACGAATCCAGGCGCTCCGGCATCGAGGTCATACGCGGTAACCAAGCGACCCAACAAAATCCCTGATTGAACAAGGATGCCTTGA
|
|
| DNA Sequence for Gene |
>H097_RS16145
ATGCACCAACGTTTAGCACCTGTGTTCACTCAAATGGCCTGGGCACTGATGCTGTCCAGCCTGCCTGTCGGCCTGGCGTTTGCGGCCTCGGACAGTTGCA GCAACCTGGGCGCCCTGCCGGCCGTGGTCGAGGTCGGCGAAGGCTTGCAGCAAACCCTGCAATCACCGGTGGCAATTACCCGCTTGGCCATCGGCGACCC GAAAATCGCCGATGTGCACCTCAACGGTGACCGCAGCTTCCTGCTCACCGGCGTTGCTTCTGGTGCCACCAGCCTGATGGTCTGGACTCGCTGTTCCAGC GCCCCGCGCCAGAGCATGGTATTCGTCAAGGGCAAAGCCAGTTCAAGCCTGACCAGCCAGGCCCTGTCGCCCTCCGACGACCCGTCCCTGCCGAGCCAGG TGCAGACCGATATCCGCTTTGTCGAAGTCAGCCGCACCAAGCTCAAGGAGGCCAGCACATCAATCTTTGGCGGCACTGGCAACTTCCTGTTCGGCAGCCC GCGTACAGCGGGCATGAGCCTGCCGCTGGACAACAACACCTTTAACATCGGCATCGGCGGCGGGCGGTTTTCGGCGCTGATCAATGCCCTGGAACGCAGC GGCTTTGCCTATACCCTGGCGCGGCCGAGCCTGGTTGCCATGAGCGGGCACAGCGCGACCTTTCTCGCCGGCGGCGAAGTACCGATCCCGGTGCCCAGTA CCGGCAGCGATACGATTTCCATCGAGTACAAAGAGTTCGGCATCCGCCTGACGTTGACCCCCACCGTGATCGACCGCACGCGGATTTCCCTCAAGGTGGC GCCGGAAGTCAGCGAACTGGATTACGCCAACGCCTTGCAGGTAGAAGGCATCCAGGTGCCGGCCCTGACCGTGCGCCGTACCGACACCACGGTGTCTTTG GCCGACGGCGAAAGTTTTGTGATCAGCGGCCTGATCAGTAATAACAACCGTTCCACCATCAGCAAGTTTCCAGGCCTGGGCGATATCCCGATCCTCGGTG CGTTTTTCCGCGACAGCAACGTCAGCCGCGAGGAAAAAGAGCTGCTGATGATCGTCACCCCGCACTTGGTCCAGCCCCTGGCCGCCAACGCACGCCTGCC GTCCCTGCCCGGGGAAAAACTGCGCAACTACGACCCCAACTGGTATCGCCTGTACTTCCTGGAAAACGGCAACTTCGACCGACGCACAGGACTTTCCCAA TGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCGATAGCCTGAGCCAGACGTTCCTGGCAATCACCCGCAACACCACCGACCTGGAATGGCTGCAAGGCGCCCTCGCGCCCCTGGGCCAAGTGGTCAGTGC CGGTGGTGGCAGCCTCGACGAACTGTTGGCCCTGGTGGACGTGACCTTCGCCAACCTGGTGTTCGTGGGCCTGGACCGCGAGCATGTGGTGGCCCAGAGC GCCTTGATCGAGGGCGCCCTGGAAGCCAAGCCGATGCTGGCTATCGTCGCCCTCGGTGACGGCATGGACAATCAACTGGTGCTCAACGCCATGCGTGCCG GCGCGCGGGATTTTGTCGCCTACGGTTCACGCTCCAGCGAAGTCGCCGGCCTGGTGCGACGCCTGAGCAAGCGCCTGCCCCCGGTCGCTCACAACGCACA CCTGGGCGGCCTCACTGTGCTGTATGGCACCCAGGGCAATGCCGACGGCGCCCTGCTCGCCAGCCACCTGGCGATGGTGGTGCAAAAGAGCGGTCAACAG
|
|
| Amino Acid Sequence |
>secretin
MHQRLAPVFTQMAWALMLSSLPVGLAFAASDSCSNLGALPAVVEVGEGLQQTLQSPVAITRLAIGDPKIADVHLNGDRSFLLTGVASGATSLMVWTRCSS APRQSMVFVKGKASSSLTSQALSPSDDPSLPSQVQTDIRFVEVSRTKLKEASTSIFGGTGNFLFGSPRTAGMSLPLDNNTFNIGIGGGRFSALINALERS GFAYTLARPSLVAMSGHSATFLAGGEVPIPVPSTGSDTISIEYKEFGIRLTLTPTVIDRTRISLKVAPEVSELDYANALQVEGIQVPALTVRRTDTTVSL ADGESFVISGLISNNNRSTISKFPGLGDIPILGAFFRDSNVSREEKELLMIVTPHLVQPLAANARLPSLPGEKLRNYDPNWYRLYFLENGNFDRRTGLSQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|