Pseudomonas sp. FH4, H097_RS20375 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FH4 scf_29086_10.1_contig_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGGCCTGTATAGGCTCCGCTCGACTCAGGCGATCCAAACCTTCAACGACCAGAACTGACCCGCTGGCGATTCGGCCGTCCTCGACCGCACGTAGGAAAA CCCCCAGCGCCCCTTGTTTGACATGGCGCTGGTGATAAGCGGATAGACCTTCATCTTTCAACGTTAGCGTGGCATCCAGCGCCATACCCCGCTGTGCTGC CCAGGACGCCGCATAGGCCAGTTGACGATCCGCACTGCTTCCTATTGCTTGGCGTGGGTCAGAGAAGCGTAGATAGCTATACACATGGCCGGCATGTTTC AAAATGAAACACCAGCACTATTGCCACGTCCAAAGACGCTCTCCCATATCCCCATCGCGTCGATAAAAAACACTCCTAGCACTCCCTCGTTTTACGAACA ATACTCGTTTGCGACAATTGTTTTTGCGCATTATTTGATCAACGCTTAGAATCGCGCGCCACGAAATTCGACCAGGGCAAACCCTGCAGGCTGTGAGTAT
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| DNA Sequence for Gene |
>H097_RS20375
|rimO
ATGAGTAATAATCCACGTGTAGGGTTTGTATCGCTAGGGTGCCCGAAAGCTCTGGTCGACTCCGAGCGCATCCTCACCCAACTGCGCATGGAAGGGTACG ATGTCGTGTCCACCTACCAGGACGCCGACGTGGTGGTGGTCAACACCTGTGGCTTCATTGACTCGGCCAAGGCCGAGTCTTTGGAAGTGATCGGCGAAGC CATCAAGGAAAACGGCAAGGTCATCGTCACCGGCTGCATGGGCGTGGAAGAAGGCAATATCCGCAACGTGCACCCAAGCGTGCTGGCCGTAACCGGCCCG CAGCAGTACGAGCAGGTGGTCAATGCCGTACACCAAGTGGTGCCACCGCGCCAGGACCACAACCCGCTGATCGACCTGGTGCCGCCGCAAGGCATCAAGC TGACCCCGCGTCATTACGCTTACCTGAAAATTTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATTCCGTCGATGCGTGGCAAGCTGGTCAGCCG CCCGGTGGGCGATGTGCTGGACGAGGCCCAGCGCCTGGTCAAGTCTGGCGTCAAGGAGCTGCTGGTGATCTCCCAGGACACCAGCGCCTACGGCGTCGAC GTGAAGTACCGCACCGGTTTCTGGAACGGCGCGCCAGTGAAAACCCGCATGACCGAACTCTGCGAAGCCTTGAGCAGCCTGGGTGTGTGGGTGCGCCTGC ACTACGTCTACCCGTACCCGCACGTGGACGAGTTGATCCCGCTGATGGCCGCCGGCAAGATCCTGCCGTACCTGGACATCCCGTTCCAGCACGCCAGCCC GAAAGTGCTCAAGGCCATGAAACGCCCGGCGTTTGAAGACAAGACCCTGGCGCGGATCAAGAACTGGCGCCAGATCTGCCCTGAGCTGATCATCCGCTCG ACATTCATCGTCGGCTTCCCTGGCGAAACCGAGGAAGACTTCCAGTACCTGCTGGATTGGCTGACCGAAGCCCAACTGGACCGCGTTGGCTGCTTCCAGT ACTCGCCAGTGGAAGGTGCGCCGGCCAACCTGCTGGACCTGGCCGTGGTGCCGGATGACGTCAAGCAGGACCGTTGGGAGCGCTTCATGGCCCATCAACA GGCCATCAGCTCCGCACGCCTGCAACTGCGCATCGGCAAGGAAATCGAAGTGCTGATCGACGAAGTGGACGAGCAAGGCGCGGTCGGCCGCTGCTTCTTC GACGCTCCGGAAATCGACGGTAACGTATTCATCGACGATGCCAGCGGCCTCAAGCCGGGCGACAAAGTCTGGTGCACGGTCACGGACGCCGACGAGTACG ATCTCTGGGCGCAAAAACGCGACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTGTAAAAAATTGAAAAAGCCCTGCTTCTGGACAAGATGCGGGGCTTTTTTAGGTCTATCGTTTGCCCCATTACCGCCAACAAGCAGCAAGGAGCAGCG GGCATGGGCCAGCACTCGGTTATCCACACCCCCAAACCCAGCGACTATCAGGAGCTGACCCGGATCTGGGAGGCATCGGTGCGGGCCACCCATGACTTCT TGCCGCAAAGTTACATCGAGCGCCTGAGAAACCTGGTGCTCACGCGCTACCTGGATGCCGTGATGCTGATCTGCACCAAGGACACGCGCCAGCGTATCAC CGGCTTTGCCGGCGTCGCGGCAGGCAAGGTCGAGATGCTGTTCATCGATCCGCAGTACCGAGGCCAGGGCCTGGGGCGGCAATTATTGCGCTATGCCATT GAGTCGATGAATGCCGAGGAACTGGACGTCAACGAACAGAACCCGCAGGCCCTGGGCTTCTACCTTAAACAGGGCTTTGAAGTGATCGGGCGCACCGAGC
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSNNPRVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRNVHPSVLAVTGP QQYEQVVNAVHQVVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTSAYGVD VKYRTGFWNGAPVKTRMTELCEALSSLGVWVRLHYVYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKNWRQICPELIIRS TFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDLAVVPDDVKQDRWERFMAHQQAISSARLQLRIGKEIEVLIDEVDEQGAVGRCFF DAPEIDGNVFIDDASGLKPGDKVWCTVTDADEYDLWAQKRD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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