Strain | Pseudomonas sp. FH4 scf_29086_9.1_contig_1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CACCGCCGGGATGCACGCCAAGACCGCCAGCTACATCATGACCGGCGCGCTGTTCCTCTACATGTGCATGCAACCGCTGTTCGGCATGCTCTCGGACAAG ATCGGCCGGCGTAACTCGATGCTCTGGTTCGGCGCCCTCGGCACCCTGTGCACGGTGCCGATCCTGATGACCCTGAAAACCGTAACCAGCCCGTTCCTGG CCTTTGTGCTGATTACCCTGGCGCTGGTGATTGTCAGTTTCTACACCTCCATCAGCGGCCTGGTGAAAGCGGAAATGTTCCCGCCACAAGTGCGCGCCCT CGGTGTGGGCCTGGCCTATGCGGTGGCCAACGCGATCTTCGGTGGTTCGGCGGAATACGTGGCACTGGGCCTGAAGTCCATCGGCCTGGAAAACACCTTC TACTGGTACGTGACTGGCATGATGGCTATTGCGTTCCTGTTCAGCCTGCGCCTGCCGAAACAGGCTGAGTACTTGCACCACGATCTGTAAGGGAAGAGTT
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DNA Sequence for Gene |
>H097_RS21600
ATGACGCTGCGCACGAGCAACCAATTGTTCGACGCTTATTTCACCGCTGACAGCATGGCCGAGGTGTTCTGTGACCAGGGACGCTTGCAGGGCATGCTGG ATTTCGAAGCCGGATTGGCCCGGGCCCAGGCCCGGGTTGGGCTGATCCCGACGGCCGCTGTCGCACCGATTGCCCAGGCGTGCCTGGCCTCGTTGTACGA CGTGGATGCCCTCGGTGTAGCGATTGCCACTGCGGGTAATTCGGCGATTCCATTGGTGAAAGCGCTGGGCAAGTTGATTGCCAGTGAAGACGCCGGCGCC GAACGCTATGTGCATCTGGGTGCGACCAGCCAGGATGTGATGGATACGGGCCTGGTGCTGCAACTGCGGCGGGCGCTGGAGTTGATCGAGACAGACCTGG CCCGGCTGGGCGCGGTGCTCGCCGCCCAGGCGCAGCGCTATGCCGATGTGCCATTGGCCGGGCGCACCTGGTTACAGCACGCCACGCCGGTGACCCTGGG GATGAAAATCGCCGGTTGGCTGGGGGCGGTGACGCGCAGTCGCCAACGGCTGGTGGAGTTGAAGCCGCGCCTGCTGGTCCTGCAATTCGGCGGGGCGTCC GGTACCTTGGCGGCGTTGGGCGAACAGGCAATACCGGTGGCGCAAGTCCTGGCGACGGAGTTGCAACTGGCGCTGCCGGAACAACCCTGGCACACCCAGC GTGATCGTCTGGTGGAGTTCGCCAGCGTTCTTGGCCTGATCGCTGGCAGCCTCGGCAAGCTCGGTCGGGATATCAGCCTGCTGATGCAGACCGAAGCGGC GGAAGTGTTCGAACCCTCGGCACCGGGCAAGGGCGGTTCTTCCACCATGCCGCACAAACGCAACCCGGTGGGCGCCGCTGTACTGATCAGTGCTGCCACC CGTGTACCTGGCCTGGTGTCGACGATGTTCAGCGCCATGCCCCAGGAGCACGAACGCAGCCTGGGCCTGTGGCATGCCGAGTGGGAGACCTTGCCTGAAA TCTGCCGCCTGGTGTCCGGTGCCTTGCATCAGGCGTTGCTAGTGAGCGAGGGCCTGGAAGTCGACGCGCAACGCATGGGCAACAATCTTGACCTGACCCA GGGGCTGGTGCTGGCCGAAGCCGTCAGTATCGTGCTCGCCCAGCGCCTGGGCCGCGAAACCGCCCATCACTTATTGGAGCAATGCTGCAAACGCGCCGTC GCCGAGCAGCGCCATTTGCGCGCCGTACTGGCCGATGAGGCACAAGTCACGGCTCAGCTGTCGGCGGCTGAACTGGATCGTCTGCTCGACCCGGCCCACT ACCTGGGGCAGGCCCAAACCTGGGTCAGCCGCGCAGTGACCGAACACGTTGCATTTTCTGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GGAGGCTGCTGTGGGATCTGTACAACTCGCCGATGGCGAACTGAATTACCAACTGGAAGGCCCCGAAGGTGCACCGGTATTGGTGTTGTCCAACTCACTG GGCACTGACCTGCGGATGTGGGACACACAGATGCCGGCGTTCACCGAACATTTTCGGGTGTTGCGCCTGGACACCCGTGGCCACGGCAAATCCCTGGTCA CCGCAGGCCCCTACAGCATCGAACAGCTGGGGCGGGATGTGCTGGCGCTGCTGGATGCGCTGAACATCGAACGCGCGCATTTCTGCGGCTTGTCCATGGG TGGCCTGATTGGCCAGTGGCTGGGCATCAATGCGGGCGAACGCTTGCTCAAACTGGTGGTGTGCAACACCGCAGCGAAAATCGGCACCCCGGACATCTGG AACCCTCGCATCGAAATGGTCTTGCGCGATGGCCCTGCGGCCATGGTGGCATTGCGTGATGCGTCGATTGCGCGCTGGTTCACGGCTGATTTTGCCCAGG
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Amino Acid Sequence |
>3-carboxy-cis,cis-muconate cycloisomerase
MTLRTSNQLFDAYFTADSMAEVFCDQGRLQGMLDFEAGLARAQARVGLIPTAAVAPIAQACLASLYDVDALGVAIATAGNSAIPLVKALGKLIASEDAGA ERYVHLGATSQDVMDTGLVLQLRRALELIETDLARLGAVLAAQAQRYADVPLAGRTWLQHATPVTLGMKIAGWLGAVTRSRQRLVELKPRLLVLQFGGAS GTLAALGEQAIPVAQVLATELQLALPEQPWHTQRDRLVEFASVLGLIAGSLGKLGRDISLLMQTEAAEVFEPSAPGKGGSSTMPHKRNPVGAAVLISAAT RVPGLVSTMFSAMPQEHERSLGLWHAEWETLPEICRLVSGALHQALLVSEGLEVDAQRMGNNLDLTQGLVLAEAVSIVLAQRLGRETAHHLLEQCCKRAV AEQRHLRAVLADEAQVTAQLSAAELDRLLDPAHYLGQAQTWVSRAVTEHVAFSA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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