Pseudomonas sp. FH4, H097_RS21625
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FH4 scf_29086_9.1_contig_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCCTCTGCCTGGCAGCACTGTACGAAAGCTGGTCGATCCCGATTGCGGTGGTACTGGTTGTACCGCTGGGTGTCATCGGGGCATTGATGGCTACCAGCC TGCGAGGTTTGTCCAACGACGTGTTCTTCCAGGTGGGCTTGTTGGTGACCGTGGGCCTGGCCTCGAAGAACGCGATCCTGATCGTGGAGTTCGCCAAAGA ACTGCATGAACAGGGCAAGGGCCTCGTCGAGGCGGCCGTGGAGGCCTCCCGCATGCGTCTGCGACCGATCATCATGACGTCCATGGCGTTCATCCTCGGC GTACTGCCGCTGGCGATCTCCTCGGGCGCAGGTTCAGGCAGCCAGCACGCAATCGGTACCGGGGTAATTGGCGGTATGATCACCGCCACCGTCCTGGCGA TCTTCTGGGTGCCACTGTTCTTTGTGACCGTGTCTGCCATTGGCAGCCGCAAAAAAACTGACAAGTCCGATACACCGCACACATCTAAAGAGGCTGGCTA
|
|
| DNA Sequence for Gene |
>H097_RS21625
ATGCGCAAGTCGCTACTTTCCCTGGCAGTCACGGCATTCGTGCTCAGTGGCTGCTCGCTGATTCCTGATTATCAGCAGCCTGAAGCGCCGGTTGCCGCCC AGTTCCCACAGGGGCCGGCGTATTCGGCGGCCCAGGCGCCGAGCCAGGCCGCTGCCGAGCAAGGCTGGAAGCAGTTTTTCCACGACCCGGCCCTGCAACA GCTGATCCAGGTTGCACTGGAGAACAACCGCGACCTGCGTGTCGCGGCGCTGAACATCGACGCCTTTGCCGCGCAGTACCGCATCCAGCGCGCCGACCTG TTCCCGGCCGTCTCGGCCAATGGCAGCGGCAGCCGCCAGCGCACTCCGGCACGGGCTTCGCAAACCGGCGAATCGAACATTTCCAGCTCCTACTCGGCCA CCCTCGGGGTCAGCTCGTATGAGCTGGACCTGTTCGGCCGGGTGCGCAGCCTGAGTGAAGAAGCGCTGCAAAAGTACTTCGCGACCGAAGAAGCACGCCG CAGCACACAGATCAGCCTGGTGGCCAGCGTGGCCAATGCCTACCTGACCTGGCAGGCCGACAAAGAGCTGCTCAAGCTGACCCAGGACACCCTGGCGGCC TACGAGCAGAGCTTCAAGCTCACCTCGCGCAGCAACGAAGTCGGCGTGGCCTCGGCCCTGGACTTGAGCCAGGCGCGGACCTCGGTTGAAAGCGCCCGCG TCCAACTGGCCCGCTACACCCGCCAGGTGGCCCAGGACGAGAACAACCTGACCCTGCTGCTGGGCACCGGCCTGCCGGCGAATCTCGCCACCCAGCCGCT GTCCGATGACCTGTTGAGCGAAGTTCCACCAGGCCTGCCATCTGACCTGCTGCAACGCCGTCCCGACATCCTGCAGGCCGAGTACAACCTCAAGGCTGCC AACGCCAACATCGGCGCGGCACGGGCTGCGTTCTTCCCGAGCATCAGCCTGACAGCCAATGCCGGCACCCTGAGCCCGGACCTCGGTGGTCTGTTCAAGG GTGGTTCGGGCACCTGGTCGTTCGCCCCGCAGATCAACATCCCGATCTTCAACGCCGGTAGCCTGCGCGCAAGCCTGGACTACTCGAAGATCCAGAAAGA GATCAACGTCGCGACCTACGAGAAGTCGATCCAGACGGCATTCCAGGAAGTCTCCGACGGCCTGGCAGCACGTGCGACCTACAACCAACAGTTGCAGGCC CAACGTGATTTCGTCGCGGCCAACCAGGACTACTACCGCCTGGCCGAGCGTCGCTACCGTATCGGGGTCGACAGCAACCTGACCTTCCTCGATGCCCAGC GCCAGTTGTTCAGTGCCCAGCAAACGCTGATCACCGACCGCCTGGCCCAACTGACCAGCGAAGTGACCTTGTACAAGGCCCTTGGCGGCGGTTGGAATGA GCAAACGGCGAAGAATGAACCGCTGAAAGAAGAAGCGCCGAAGCTCAAGTTGTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCGGCGTAGCGACACAGGAAGCCCACCTTTTGGTGGGCTTTTTCATGGGCATACAGTTCCGTTCGATCACCGCCCAGAACCCGCCCTCCCCCGATTGAAC CGCCCCCGCAACGCCCCGCACCATGGCCCGCACCTGCATAACCCCAATAACAACAGGTCCCACGCCATGAGCACTTTTCATCCTTGCCGGCTATTGCTGG CTACCGCTGTTGCCAGCCTTGCCTTGCCAGCCATCGCCCAAGAACACGGCTTTCTCGAAGACGCCAGCGCCAGCCTCAACCTGCGCAACTTCTTCATCAA CCGCAACTTCACCAACCCGACCAAGGCCCAGGGCGGCGCGCAGGAGTGGACGCAGAGTTTCATTCTCGATGCCAAGTCCGGCTTCACCCAGGGCACCGTC GGTTTTGGCCTGGATGTACTGGGCATGTACTCGCAGAAACTCGATGGCGGCGGCGGTTCCGGCGGCACTCAGTTGCTACCGCTGGACTATGATGGCAAGC
|
|
| Amino Acid Sequence |
>multidrug transporter
MRKSLLSLAVTAFVLSGCSLIPDYQQPEAPVAAQFPQGPAYSAAQAPSQAAAEQGWKQFFHDPALQQLIQVALENNRDLRVAALNIDAFAAQYRIQRADL FPAVSANGSGSRQRTPARASQTGESNISSSYSATLGVSSYELDLFGRVRSLSEEALQKYFATEEARRSTQISLVASVANAYLTWQADKELLKLTQDTLAA YEQSFKLTSRSNEVGVASALDLSQARTSVESARVQLARYTRQVAQDENNLTLLLGTGLPANLATQPLSDDLLSEVPPGLPSDLLQRRPDILQAEYNLKAA NANIGAARAAFFPSISLTANAGTLSPDLGGLFKGGSGTWSFAPQINIPIFNAGSLRASLDYSKIQKEINVATYEKSIQTAFQEVSDGLAARATYNQQLQA QRDFVAANQDYYRLAERRYRIGVDSNLTFLDAQRQLFSAQQTLITDRLAQLTSEVTLYKALGGGWNEQTAKNEPLKEEAPKLKLF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|