Pseudomonas sp. FH4, H097_RS25145
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FH4 scf_29086_2.1_contig_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCGGTTGAATGGCTCTTCCCAAAACCGCTGCAAGGGCCTTACATTGGCACTTGTAGCGTGTTTGCCGGGGCCTGCGCAAAATCAGCGCTTCCCTAAACG CTGGTGATTTTTTAAACTGTTGAGTCCGCTCGCCCAACCGGGCAGCGCGCATCTTGCATTCGCTCCGAGGAATACCATGGCCCGCGTAACCGTTGAAGAC TGCCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAATTGGCCACTGGCGGCAAAGAGCCGTTGCTCAATTGGG AAAATGACAAGCCTACCGTTATGGCCCTGCGCGAAATCGCTGCCGGCGTGATGAGCTATGACTACATCGCCAGCGCTGAAATCGTTGAAGACGAACCGCT GTTTGCAGCGTTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGGTCACAGCCTACGGCAGGAGTTAATACT
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| DNA Sequence for Gene |
>H097_RS25145
TTGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGACCTACCTCGGTACCGACCAGGTCAACCTGGTCCGCCGAGCGTATTTCTACGCCGAGCAAGCCC ACGACGGCCAACGCCGCCGCAGCGGCGAGGCGTACGTCACCCATCCTCTTGCGGTGGCCAATATTCTTGCCGACATGCACATGGACCATCAAAGCCTGAT GGCCGCGATGCTGCATGACGTGATCGAAGACACCGGCATTGCCAAGGAAGCGCTCAGTGCGCAATTTGGCGAAACCGTGGCCGACCTGGTCGACGGGGTC AGCAAGCTGACCCAGATGAACTTCGAGACCAAGGCCGAGGCCCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGGGATATCCGGGTGATCC TGGTCAAGCTGGCCGACCGGCTGCACAACATGCGCACGCTGGAAGTGCTGTCCGGTGAAAAACGCCGGCGCATCGCCAAGGAAACCCTGGAAATCTACGC GCCCATCGCCAACCGGCTGGGCATGCATGCCATTCGTATCGAATTCGAAGACCTTGGCTTCAAGGCGATGCACCCGATGCGCTCGGCGCGCATCTACCAG GCGGTCAAGCGCGCCCGGGGCAATCGCAAGGAAATCGTCAACAAGATCGAAGAGTCCCTGAGCCACTGCCTGGCAATCGACGAGATTGAAGGCGAAGTCA GCGGGCGGCAGAAGCATATCTACGGCATCTACAAGAAGATGCGCGGCAAGCGCCGGGCCTTCAACGAGATCATGGACGTGTATGCGTTCCGGATCATCGT CGACAAGGTCGATACCTGTTACCGCGTGCTGGGCGCTGTACATAATTTGTACAAACCCCTGCCGGGGCGCTTCAAGGACTACATCGCCATTCCCAAGGCC AACGGCTACCAGTCGCTGCATACCACGCTGTTCGGTATGCATGGGGTGCCGATCGAGATCCAGATCCGCACCCGGGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCCCATTGGCTGTACAAATCCAGCGGCGACGAGCAGCCCAAAGGCACCCATGCCCGCGCCCGCCAGTGGGTCAAGGGCGTGTTGGAAATGCA GCAACGCGCTGGCAACTCCCTGGAATTCATCGAAAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAG CTGCCCAAGGGCTCCACGGCGGTCGACTTTGCCTACGCGGTCCACACCGACGTCGGCAACAGCTGCATCGCATGCCGGATCAATCGTCGCCTGGCCCCGC TGTCGGAACCGCTGCAAAGCGGCTCCACCGTGGAGATCGTCAGCGCGCCAGGGGCCCGGCCGAATCCGGCGTGGCTCAACTTCGTGGTCACCGGCAAGGC ACGTACCCATATTCGCCATGCGCTGAAGCTGCAACGCCGCTCCGAGTCCATCAGCCTGGGCGAGCGCCTGCTGAACAAGGTACTCAACGGTTTCGACAGC TCCCTGGAGAAGATCCCCGCCGAGCGCGTACAGGCGATCCTCCACGAGTACCGCCAGGAAACCATCGAAGACCTGCTCGAAGATATCGGCCTGGGCAATC GCATGGCCTACGTCGTCGCCCGCCGCCTGCTGGGCGAAGGCGAGCAACTACCGAGCCCCGAAGGCCCGCTGGCCATTCGCGGCACCGAGGGCCTGGTCCT CAGCTACGCCAAGTGCTGCACGCCGATCCCGGGCGACCCGATTGTCGGGCACCTGTCCGCCGGCAAAGGCATGGTGGTGCACCTGGACAACTGCCGCAAT ATCAGTGAAATCCGCCACAACCCGGAAAAATGCATCCAGCTGTCATGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAGCTGCGGGTCGAGCTGGAGC ACCAGCGCGGGCTGATCGCCTTGCTGGCCAGCAGCGTCAACGCGGCCGATGGCAATATCGAAAAAATCAGCATGGACGAACGCGATGGTCGCATCAGCGT GGTCCAACTGGTGGTCAGCGTGCACGACCGCGTACACCTGGCCCGCGTGATCAAGAAACTGCGTGCCCTGACCGGGGTTATCCGCATCACTCGCATGCGC GCATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCCTCCCCTATAGCCCGGACATTACAAGGAGTCATTCATGACCAAGACTGTTATCACCAGCGACAAGGCACCTGCCGCCATCGGTACTTATTCCCAGGC GATCAAGGCGGGCAACACCGTCTACATGTCCGGCCAGATCCCACTGGACCCAAAGACCATGGAGCTGGTTGAAGGCTTCGAAGCCCAGACCGTACAAGTC TTCGAAAACCTCAAGTCGGTAGCCGAAGCAGCGGGCGGTTCGTTCAAGGACATCGTCAAGCTGAACATTTTCCTCACCGACCTGAGCCACTTCGCCAAGG TCAACGAGATCATGGGCAAGTACTTCGAACAACCCTACCCAGCCCGCGCCGCCATTGGCGTTGCCGCCCTGCCCAAGGGTTCGCAGGTTGAGATGGACGC GATTCTGGTCATCGAGTAATACATTCGGCGCAACCCAATAGGTTGCGCCGACTTCGTTTTAAAAGGATTTCGTAATGCGCAAAGCGCTCGTTGCCTCCAC
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPSIDALADRLSTYLGTDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALSAQFGETVADLVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARIYQ AVKRARGNRKEIVNKIEESLSHCLAIDEIEGEVSGRQKHIYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS SLEKIPAERVQAILHEYRQETIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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