Pseudomonas sp. FH4, H097_RS25255

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. FH4 scf_29086_2.1_contig_1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGTATTGCGTGCACGCAGCAGCCTCAAGGGCGAGTTCCGCATGCAGCAGACGACGATCCAGCCGGTGGAAAACAATCCGTTGAAATTCGCCCCCAATGCC GACGAAGCGTTACTGCTGCTGCTTCGCCACGGCAACCAGGCGTTTATGGCGCCGGATCTGGCTGTGCGCGACAGTTTCGACGATCTGCGTGCCCATCAAC TGGCGGTGATGGCCGGCGTCGAGGCGGCTATCAAACACCTGCTGACGCGTTTTGAACCTGCGCAGTTGGAAGAGCGCATGGGCAAGCCCGGCGGGTTGTC GAGCCTGTTCAACGGTTCGCGCCAGGCCCAGTACTGGCAACAGTTCACCGAGCTCTACAACAGTATTTCCCGCGAGGCCCAGGAGGATTTCCAGGACCTG TTCGGCCGTGAGTTCAGCCGGGCCTATGAAGCACACAGCGCACGACAGCGGCGCTGAAACTGGAACAACGGACAGCCACATACGTCATTGAGGACGCAGG
DNA Sequence for Gene
>H097_RS25255
ATGATTTCCAGGTTTTTACTCGCTACCGCCAGCCTGTTGCTGCTGACGGCTTGTGCCAAGGATACCGCGCCACCCCAGGCGCCAGAGACACCCATCGACT CTACCCGCGTCGAGTTGCACTTCCATGCCATCAGCGGCCTCAACCCTGGCACCACGGGCCAGCCAGCACCGGTGCGGGTGCGGATTTTCGAGCTGAAAAA CGCCGCGACCTTCAGCCGTGCCGATTACTTCGCCCTGGCGGATCGCGCCCAGCCGACCCTCGGCCTGGACCTGCTGGACCAGGATGAAGTAGTGATCCAG CCCGGCCAGCAAGTGAGCATCCAGCGCGATCTCGACCCGGCCACCCGGCAGATCGGCCTGCTGGTGGGCTATCGCGAATTGGACCGCGCGCAATGGCGCA CGGTCCTCAGCGTGCCGCCACGCCAGGCCAGCGAATACCAGATCAGCCTTGATGTGCGCTCCGTACGTGCGCACCTCAGTGTTGCCCCATCCAGCCCTGC CCAATAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GAAGCAATCGGAGCCCCCATGTCCTGGAACAATCGCGTGGTCTGGTCGGAAGGCATGTTCATCGGAACGCAGCACTTCCAGCAGCATGACCGTTACCTGG AAAACCTGATCGATGCCCGCAGTCGCCCACTGTCGGCCGGTGCCTGGGGGGTTTCCGAGTTGCTGATCGACCAGGGCCTGCTGGCCCAGGGCAAGCTGGC CATTGTCTCGGCGCGGGGCCTGTTGCCCGATGGCACGCCGTTCAACATTCCCCAGGACGACCTGGCACCAAGCCCGCTGAATATCGATGACAACCTGCGT GATGGCCTGGTGTACCTGGCCTTGCCCCTCAAGCGCGCTGGTGCCCGCGACACCGTAGATGAAGGCGAGGCCCTGGGCGCCGCGCGTTACCTGAGCCAGG TGCGCGAGGTGCGCGATGACAACGCACCTTTCGAAAATCGCGCCCCGGTGGCCGTTGGCTCGCGCGCCTTGCGCTTGCTGACCGCCGCCGATGGCATCAG
Amino Acid Sequence
>type VI secretion protein
MISRFLLATASLLLLTACAKDTAPPQAPETPIDSTRVELHFHAISGLNPGTTGQPAPVRVRIFELKNAATFSRADYFALADRAQPTLGLDLLDQDEVVIQ PGQQVSIQRDLDPATRQIGLLVGYRELDRAQWRTVLSVPPRQASEYQISLDVRSVRAHLSVAPSSPAQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site