Pseudomonas sp. FH4, H097_RS25265
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FH4 scf_29086_2.1_contig_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAGCGGCCAATTGCCATCACTCCACTATCCATGGACTTTTCCGGACATTGACCTGGGGTGATCTTGTGATAACTAGTGATAGTCAAACACAGCGACATCT TGCCTCCTTGCTGAACCTCGCGCACGGCCGACCCAAGGGAAAACCCTTCCCAAGCGTCACCCGCAAAATCCTTTAAACAACCTTGAAAAGCCACTTTTAC CAGCATGATCGCTGATCTTAACCGGCTCTTGTGACAAAAATCTTCCAGCGGTGCCTGCTTTGACTCATGGGTCGCACAGGTTGTTAAGCACCGCACATCT GTCACACGGGACGAATAGCTTACCTTGACAACGCCTAACTACTACACCAAAAATGCACAACTTCTTGAAGATAAGTAGTGGCACATTGAAATCAATGCGC CAGCTGAACCAAGAAAACATGCCGATGAAATGCGCAACTAGCTGCGCAACTAACGCATGAACCGCCCGAGACTAAAGGGCCGATATGGAGATCGAATTTA
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| DNA Sequence for Gene |
>H097_RS25265
GTGGATGTGCCGTTGCTGCTCACCGCTGTTTCCGCGACTTCGCCGTGTGGCGAAGACTTGGAATATGACGCGGATTTCCTGCACTTGGAACGTGCTGCCC AGGGTCAACCCGAGCGCAGCATGGGCGACGCTATTTTGCCCGCCGAACCGCCCGAGTGGCGCAGCATCCAGCAACAAAGCCTGGACCTGCTGCAACGCAG CAAAGACCTGCGCATCAGCCATTTCCTGCTGCAAAGTTCCCTCGCCCTGCAAGGCGTTGGTGGGTTGGCCAGTGCCCTGACCCTGATCAGCGAACTGCTC CAGCAATACTGGGCCGACCTGCATCCGCGCCTGGATGCCGATGATGACAACGACCCCACCGTACGCATCAACGCCCTCACCGGATTGACCTGCGACACGA ACATCCGCCTGCTGCGCGAAAGCGTCCTCGCACGCTCGCGCGCCTTCGGCCCCGTGAGCCTGCGTGGCGCCCTGAATGCCAGCGGCCTGCAAAGCTTTCC CGGGGAAAATCTCGGTACTGAACAACTGGCCGCAGCCTTCCTCGACAGCGATCCAGAACAGCTGCAAGCCACCCACGCCGCCCTCGTCGAGGCCCGTGCG GCCTGTGAAACCATTGAGCAATACGTCAGCGAGCAAGTCGGTTCCGCCCAGGGCGTGGACCTCGGCGCGCTGAAGCATCCGCTCAAGCAGGCCCTGCAGA TTTTCAGCCAGTTCGCTGCGCAGAGCGGCGACAGCCGTGAACCCGAGGTTGTCAGTGACGACAGCCACGCCTCGGTCGAACACGCTGGCGCCCCTGCCGT ACCCCGCAACACGGGCGAGATCGCCAGCCGCGAAGAAGTGCTGCGCGACCTCGACCGAATCCTTGCGTACTACACCCGGCACGAGCCTTCGAGCCCGCTG CCGGTGCTGTTGAGCCGGGCAAAAAACCTGGTGCACGCCGATTTTGCAGCCATCGTGCGCAATCTGATTCCCGATGGCATGTCCCAATTTGAAAACCTGC GCGGCCCGGACGGCGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCGCCAGGCTTTGCAGTAACAACACCGTCGCTCAAGCGACCAGGAGCAGCAACGTGGCGAAGCAAAGTTCTCAGAAATTCATCGCGCGCAACCGCGCGC CTCGGGTGCAGATCGAGTACGACGTCGAGCTTTACGGCGCCGAGAAAAAGGTCCAACTGCCCTTCGTGATGGGTGTGATGGCCGACCTCGCCGGCAAACC TGCCGAGCCTCTGGCGCCGGTGGCTGATCGCAAGTTCCTTGAAGTGGACGTCGACAACTTCGACTCGCGCCTCAAGGCCATGCAGCCGCGCGTGGCCTTC CACGTACCCAACGAGCTGACAGGCGAAGGCAACCTGAGCCTGGATATCACCTTCGAAAGCATGGACGACTTCAGCCCGGCAGCCGTGGCACGCAAGGTCG ACTCGCTGAACCAGTTGCTCGAAGCCCGCACCCAGCTGGCGAACCTGCTGACCTACATGGACGGCAAGACCGGCGCTGAAGAAATCATCATGAAGGCAAT
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| Amino Acid Sequence |
>type VI secretion protein ImpA
MDVPLLLTAVSATSPCGEDLEYDADFLHLERAAQGQPERSMGDAILPAEPPEWRSIQQQSLDLLQRSKDLRISHFLLQSSLALQGVGGLASALTLISELL QQYWADLHPRLDADDDNDPTVRINALTGLTCDTNIRLLRESVLARSRAFGPVSLRGALNASGLQSFPGENLGTEQLAAAFLDSDPEQLQATHAALVEARA ACETIEQYVSEQVGSAQGVDLGALKHPLKQALQIFSQFAAQSGDSREPEVVSDDSHASVEHAGAPAVPRNTGEIASREEVLRDLDRILAYYTRHEPSSPL PVLLSRAKNLVHADFAAIVRNLIPDGMSQFENLRGPDGE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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