Pseudomonas sp. FH4, H097_RS25590
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FH4 scf_29086_2.1_contig_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGCGCATCTCGGCAGCGGCCTTGTTGGTGAAGGTCACCGACAGGATGGAATGCGGGGACGCGTTCTCGACCTGGATCAACCAGGCGATACGGTGCACCA GCACTCGGGTTTTACCGGAGCCAGCACCGGCCAGGACCAACTGACGGCCAACGGGGGCTGCTACGGCCTGGCGTTGGGCATCGTTGAGGGAGTTCAGCAA AAGGGAGAGATCATCGCGCATCGGCGCATTCTAGGGTGCCGGGGGAAGGGGGGCAAATCCCATTGCCGGGTGGTCGGCACAAAAAACCGCCGGTGATCTT CAATCGGCAAATAATCGCGTCGCCGTGATGACTGGTAAGTCATCGCCTGCAGCCCGCGTCCCGTCTTGTTCAGCCCCTCTGGGCCAAAGGTTTGCGCGGG TTTATTCGCAGAATTTTATGATCCAGAGCAGTTTGGTCTGCCGGCCTGCTTGTGTATGCTCCGTCGACGTTTCGGGCTCACCATTATAAGAACACTGCCT
|
|
| DNA Sequence for Gene |
>H097_RS25590
ATGACCCTCAGCACTGACCTGCCTGGCCCTTCTGTCGCGCCGGCGCAGGTTATCCGCAAGCACTACGCCATGGAGATGGCGGTCGAGCGCACGCGTCTGT TGTACCAAGGTTCGTTGCTGCCCACTTTATTAATGTTGATCAACGGTCTGGTCTGCGCCTGGTTGCTCTGGAGCCCGCCGCGCTATGTGCTGGTCGGCGG TTGGCTGGTGTGGTTGCTGGCGCTGGTGGCGATGCGGGTGATCCAGGTGGCGGCCTTCGACAGCGCCCTGCCCAGCCGGCAGGCACAGCCGATCTGGCGA CGGATGTTCATGTTGGGCTCGGCGGCCAGCGGCCTGACCCTGGCGAGCGCAGCCATTGCCCTGGTGCCCTTGGACAGTTTCGTACAGCAGGCCTGGATCT TTGGCCTGATTGGCGTGGCGACGCTATCGGCCAGCGTGGCCTACGCCGTGAGTGTGCCGGCCTTTTTGTCGTTTGCCTTGCCCTGCCTGGTGCCCACCAT CCTCTATCTATTCTTCAGCGGCGAACCGCGATTGCAGGGCTGGAGTTACCTGGGCCTGATTCTGCTGGCGTCCCTGAGCCTGGTGGCGTGGCAGGTCAAC CGCCTGATCCAGCGCGGTTTGCTGCGGCGTTTCCAGAACCAGGCCTTGATCGAACACCTGCAACAGGCCCGCCAGCGCAGTGAGCAGTTGAATCAGGAAC TGGTGCGCGAGGTCGAGCAGCGGCGCCAGGTCGAACAGGAACTGCGCGAGGCCCAGGTCGGCCTGCAACATCGCGTCGAACAACGCGGCCAGCAACTGGA CGCCGCCAGCCTGGCCCTGAGCAAAAGCGAGGCGCGCCTGGCCATGGCGTTGCAGGCCAGTGAACTGGGCTTGTGGGACTGGAACCTGCAAACCGATGAG GTCCATCACACCCAGCTCAAGGAATTGTTTGGCCTGGAGCCGGAATACGTGACGGCGATGCTGCGCGACCTCAAGCCCCGCCTGCACCCGGACGATTTGC CGCTGCTCAAGCGCGCGCTGGTGGAGCATTTGACGGGGCGCAGCGAGGACTATCAAGTGGAGTACCGCGTGCGCCATGGCGATGGGCGCTGGGTGTGGAT CGAGGACCGTGGGCGCGCTGTGGAGCGTACCGCCAGCGGACGCGTGACGCGCATGCTCGGTACCCGGCGCGATATCAGCGCCGGCAAGGCGGTGGAAGAA CAGCTGCGACTGGCGTCGACGGTATTTGAGGCGGCCAGCGAAGGCATTGTGATCCTGGACCCGGAGTACGTGCTGATTGCGGTCAATCAGGCCTTCAGCC GCGTCACCGGCTTTGATATCGACGATATGCTCGGGCGCAATGTCGTGGAGCTGCCGTGCAGCCGCGATGCGCGCCGACACTTCCCGGTGATTCGCCAGGC CTTGTTGAGTCACGGCAGTTGGCAGGGTGAGTTGGTGGAGGCGCGCAAGAACGGCGAGCTTTATCCACAATGGCTGCAATTGAGCGTGGTGCGTGATGTT CGGGGAAATGTCAGCCATATCGTCGGCTTCTTCGCTGATCTGTCGGCACGCCGCGAATCCGAGGAGCGCATGCGCTACCTCACCCATTACGACGAGCTGA CGGGCCTGGCCAACCGTTCGCTGTTTCGTGAGCGCCTGCGTGAAGCCCATCAACGGGTACGCCAGGGTGGCCGCAGCCTGGCGTTGCTGCATATCAACCT GGACCGTTTCAAGCTGCTCAATGACAGCCTGGGTCATGAAGTCGCCGACCAGTTGCTGCAAAAAATGGCCCGGCGCCTGATCAATGCATTACCGGAAGCC GACACCATTGCGCGGCTGTCCGGCGACGAATTCGCGGTGCTGTTCGATGCTTATGGCAGCCTGTCGAGTCTGGCGCGGGTCGCCACCCGGCTGCTGGCCA AGCTGCGGGTGCCGATGACGGTGGATGGGCATGAGTTGGTGGTCAGCGCCTCAATCGGGGTCAGCCTGTTACCCGATAACGCGCGGGAAATTTCCGCACT GGTCAGCCAGTCGAACATGGCCATGCAACACGCCAAGCACCTGGGCGGCAATAACTTCCAGTTCTACACCGACAGCCTGCAAGCCAGCACCCTTGAGCGC CTGCAGTTGGAAAATCAACTGCGCAAAGCCATTGATGAGCGCCAACTGAAGGTGTTCTACCAACCCAAGTTGTGCCTGGCCACCGGCAAGATGAACGCCG CCGAGGCGCTGGTGCGTTGGGACCACCCGCAATGGGGCAGCGTGCCGCCCGGTGATTTTATCGGGCTGGCGGAAGAGACCGGGTTGATTGTCCCGTTGGG TGAATTCGTGCTGCGCCAGGCCTGCTGGCAGGCGTGCGAGTGGCAGCGCCAGGGCCTGGCGCCGATCCGGGTGTCGGTCAACCTGTCGGTGCATCAGTTG CGCCAAGGCAAGCTGGTGAGCCTGGTGCGCCAGGTCTTGGACGAAACCGGGCTGGCGCCGCAATACCTGGAACTGGAACTGACTGAAAGCCAGTTGCTCG ACAGCGTCGAGCACATCATCGCCACCTTCCAGCAATTGCGCGACCTGGGGGTGAAGTTGGCCATTGATGACTTTGGCACCGGCTATTCGTCCCTCAGTTA CCTCAAGCGCATCCCTGTGGATTACGTGAAGATCGACCAGACCTTTATTCGTGGCCTGGGCCAAGGGCGTGAAGACCTGGCGATTACCCGGGCAATCATC GCCATGGCCCACGGGTTGGCGCTCAAGGTGGTGGCCGAGGGTGTGGAGGACCAGCAGCAGATGGATTTCCTGCGGGCCGAACACTGCGATGAAGTGCAGG GCTACTTGATCAGTCGACCCATCGAGGCCGAAGGCTTGGCGGATTTGTTACGAAAAAATGCGCTTTTTCCCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCGGAACGCGTGCGCACCCGCAGCTACAAAGCATTTGCCCGCTGATTCAGGGGGCAGCAGGGCGATTTAGTGATGCATCGAACGGGCAAATCAACAATTC TTGTAGTATAACTACAAGCTTGCTACATCCCTGGCGTCTGCCAATAACAAGAGTCCAGCCCTTTGAACCTGTTGCAACATATCGCCCAGTCGCGCCACCT GTTACGCAAATCGGAACTCAAGGTTGCCGATCACGTGCTGCTTGACCCTGCGGCCGTGATGCACAGTTCCATGGCTGACCTGGCCCACAGCGTGGGGATC AGCGAGCCGACCATCGTGCGCTTCTGCCGCGCCATCGGTTGTTCGGGGTTCCAGGACTTGAAGCTGAAGCTGGCCCAGAGCCTGGCGGCCGGCGCCAGCT TCGGCCAGTTCGCCATTCATGAAGACGACTCCGTCGCCGACTACAGCCTGAAAATCTTCGACACCACCCTGCACACCCTGATGGAGGTGCGGGAGAAGCT
|
|
| Amino Acid Sequence |
>diguanylate cyclase
MTLSTDLPGPSVAPAQVIRKHYAMEMAVERTRLLYQGSLLPTLLMLINGLVCAWLLWSPPRYVLVGGWLVWLLALVAMRVIQVAAFDSALPSRQAQPIWR RMFMLGSAASGLTLASAAIALVPLDSFVQQAWIFGLIGVATLSASVAYAVSVPAFLSFALPCLVPTILYLFFSGEPRLQGWSYLGLILLASLSLVAWQVN RLIQRGLLRRFQNQALIEHLQQARQRSEQLNQELVREVEQRRQVEQELREAQVGLQHRVEQRGQQLDAASLALSKSEARLAMALQASELGLWDWNLQTDE VHHTQLKELFGLEPEYVTAMLRDLKPRLHPDDLPLLKRALVEHLTGRSEDYQVEYRVRHGDGRWVWIEDRGRAVERTASGRVTRMLGTRRDISAGKAVEE QLRLASTVFEAASEGIVILDPEYVLIAVNQAFSRVTGFDIDDMLGRNVVELPCSRDARRHFPVIRQALLSHGSWQGELVEARKNGELYPQWLQLSVVRDV RGNVSHIVGFFADLSARRESEERMRYLTHYDELTGLANRSLFRERLREAHQRVRQGGRSLALLHINLDRFKLLNDSLGHEVADQLLQKMARRLINALPEA DTIARLSGDEFAVLFDAYGSLSSLARVATRLLAKLRVPMTVDGHELVVSASIGVSLLPDNAREISALVSQSNMAMQHAKHLGGNNFQFYTDSLQASTLER LQLENQLRKAIDERQLKVFYQPKLCLATGKMNAAEALVRWDHPQWGSVPPGDFIGLAEETGLIVPLGEFVLRQACWQACEWQRQGLAPIRVSVNLSVHQL RQGKLVSLVRQVLDETGLAPQYLELELTESQLLDSVEHIIATFQQLRDLGVKLAIDDFGTGYSSLSYLKRIPVDYVKIDQTFIRGLGQGREDLAITRAII AMAHGLALKVVAEGVEDQQQMDFLRAEHCDEVQGYLISRPIEAEGLADLLRKNALFP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|