Pseudomonas sp. PH1b, U873_RS0132835
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PH1b Contig37, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGACCGCCTTCCAGATCGGTTTCATGATCTTCATTCCGTTCCTGATCATCGACCTGGTCGTGGCCAGTGTGCTGATGGCCATGGGCATGATGATGCTCTC GCCACTGATCATTTCCCTGCCGTTCAAGATCATGCTGTTTGTCCTGGTGGATGGCTGGGCGTTGATCATCGGCACCTTGGCGGGCAGTTTCGGTGGTGTT TAAAACCTTGTTAGCGGGTGATCGACAATGACTCCGGAAGTCGCGGTAGACCTGTTTCGCGAAGCGCTCTGGCTGACGACCATGATGGTTGCCGTGCTGG TGGTGCCGAGCCTGCTGGTGGGCCTGATGGTGGCGATGTTCCAGGCTGCCACCCAGATCAACGAACAGACCCTGAGCTTCCTCCCGCGCCTGCTGGTGAT GCTGGTGACCCTGATCGTGGCCGGGCCCTGGCTGGTGCAAACCTTCATGGAATACATCCGTCAGTTGTACGGCAGTATTCCGCAGTTGATTGGCTGAGCC
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| DNA Sequence for Gene |
>U873_RS0132835
ATGTCCTTGCTGGCGCTTACCGACACCCAGATCGGTTCCTGGGTGGCGTCTTTCATGTTGCCGCTGTTCCGGGTCGCCTCATTGTTGATGGTGATGCCGA TCTTTGGTACCACCCTGGTGCCTCGGCGGGTGCGGCTGTACTTTGCCCTGGCGATTACCGTGGTCATCGCCCCGGGCCTGCCGCCGATGCCCGAGGTGCA TGCCCTGGACCTCAGCGGCCTGTTGCTGATCGCCGAGCAGATCCTGATCGGCGCGGTGCTGGGGTTTTCCCTGCAGTTGTTCTTCCAGTCCTTCGTGGTG GCCGGGCAGATCGTGGCGATCCAGATGGGCATGGGCTTCGCGTCCATGGTCGACCCCACCAACGGTGTGTCGGTGGCAGTGATCGGGCAATTCTTCACCA TGTTGGTGACTTTGCTGTTCCTGGCCATGAACGGCCACCTGGTGGTCTTCGAGGTGCTCACCGAAAGCTTCACCACCTTGCCGGTGGGCGCAGGCCTGAT GGTCAATCACTACTGGGAGCTGGCGGGCAAGCTCGGCTGGGTCCTGGGTGCGGCCCTGCTGCTGGTGCTGCCGGCGATCACGGCCTTGCTGGTGGTCAAC ATCGCCTTTGGCGTCATGACCCGGGCGGCGCCGCAGCTGAACATCTTCTCCATCGGTTTTCCCCTGACCCTGGTGCTGGGCATGGGCATCGTCTGGATCA GCCTGGCGGACATTCTCAATCAGTATCAGCCGCTGGCCTCCGAGGCCCTGCAGTTTTTACGTGAACTGGCAAAGGCGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCATGGCAGAGAGCGAGAGCGGCCAGGACAAGACAGAAGAGCCCACGGAGAAGCGCAAGAAAGACTCCCGGGAAAAGGGAGAGATTGCCCGCTCCAAAG AGCTCAATACCCTGGCGATCATGCTGGCCGGGGCCGGTGGCCTGCTGATCTATGGCGGTGGCCTGGCTCGGGACCTGCTGGAAATCATGCGCCTGAACTT TTCCCTGCCTCGGGAGGTGCTGCTCAGTCCTGGCGCCATGGGGCTGTACCTGCTGCATTCGGGCAAGATCGCCATCCTGGCGGTGCAGCCAGTACTGCTG ACTCTGTTGCTGGCGGCGATCATCGGACCTATTTCCCTCGGGGGCTGGCTGTTCGCGGCCAAGAGCCTGGCCCCCAAGTTCAGTCGGATGAACCCGGCCA ACGGACTCAAGCGGATGTTCTCGCCCACTGCGCTGATCGAGCTGCTCAAGGCCCTGGCCAAGTTCGCCCTGGTGCTGTTCGTGGCGCTGTCGGTGCTGTC
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| Amino Acid Sequence |
>flagellar biosynthesis protein FliR
MSLLALTDTQIGSWVASFMLPLFRVASLLMVMPIFGTTLVPRRVRLYFALAITVVIAPGLPPMPEVHALDLSGLLLIAEQILIGAVLGFSLQLFFQSFVV AGQIVAIQMGMGFASMVDPTNGVSVAVIGQFFTMLVTLLFLAMNGHLVVFEVLTESFTTLPVGAGLMVNHYWELAGKLGWVLGAALLLVLPAITALLVVN IAFGVMTRAAPQLNIFSIGFPLTLVLGMGIVWISLADILNQYQPLASEALQFLRELAKAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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