Pseudomonas sp. PH1b, U873_RS0132235

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PH1b Contig34, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCGACAACCAGGTCAACCCCAAGACCGGCACCATCCGTGGCCGTGCGGTGTTCGACAACAACGACGGCAGCTACACCCCGGGCCTCTATGCACGCCTGAA ACTGGTGGGCAGCGGCACCTACTCGGCAATGCTGATCAGCGATGAAGCCGTGGGCACCGACCTGGGCAAGAAGTTCGTACTGGTGATGGACGCCGACAAC AAGCCGGCCTACCGCGCCGTGGAACTGGGGCCGAAGATCGAAGGCCTGCGCATCGTGCGCAACGGCTTGAGCAAGGACGACACCATCATCGTCAAGGGCT TGCAACGGGCACGTCCGGGCGCACCGGTCACGCCTGAAGTGATCCCCATGGCCAGCAAGGAAACCCTCGCCGCCCTGGCCCAACAACGCCAAGCGCTGGA AGCCAGCAACCTGCCGCAGGTCCCCCCTGCCAAAGGCGCTGCGGCTCCCGCCGTGAAACTCGCCGCTGCGACACCGCGCGGTTAAGGGACGACTCTCAAG
DNA Sequence for Gene
>U873_RS0132235
ATGAATTTTTCCCAGTTCTTCATATCCAGGCCGATCTTCGCCGCGGTGCTATCGCTGCTGATCCTGATCGCCGGTGCCATCTCGCTGTTCCAGCTGCCCA TCAGCGAATACCCGGAAGTGGTGCCGCCCACCGTGGTGGTGCGTGCCAACTTCCCGGGGGCCAACCCCAAGGTCATCGGTGAAACCGTGGCCGCGCCCCT GGAACAGGCGATCACCGGGGTCGAGAACATGCTCTACATGTCCTCGCAATCCACCGCTGACGGCAAGATCACCCTGACCATCACCTTCGCCCTGGGCACC GACCTGGACAACGCCCAGGTGCAGGTACAGAACCGCGTGACCCGCACCCAGCCCAAGCTGCCGGAAGAAGTGACGCGCATTGGTATCACCGTGGACAAGG CCTCTCCGGACCTGACCATGGTGGTCCACCTGACCTCGCCGGACAAACGCTACGACATGCTCTACCTGTCCAACTACGCCCTGCTCAACATCAAGGATGA GCTGGCGCGCCTGGGCGGTGTCGGGGATGTGCAGCTGTTCGGCATGGGCGACTACTCGCTGCGGGTCTGGCTGGATCCGAACAAGACCGCCTCGCGCAAC CTGACCGCCACCGACGTGGTCACCGCCATCCGTGAACAGAACCGCCAGGTCGCCGCCGGTGCCCTGGGCGCGCCGCCTGCGCCGACCGCCACCAGCTTCC AGCTGTCGGTCAACACCCAGGGCCGCCTGGTCACCGAGGAAGAGTTCGAGAACATCATCATCCGCTCCGGCGACGACGGTGAGATCACTCGCCTCAAGGA CATCGCCCGCATCGAGCTGGGGTCGAGCCAGTACGCCTTGCGTTCGCTGCTCAACAACCAGCCGGCGGTGGCGATCCCGATCTTCCAGCGCCCGGGCTCC AACGCCATCGAGATCTCCAATGAAGTGCGGGCCAAGATGGCCGAACTGAAGAAGAGCTTCCCGCAGGGCATGGACTTCAGCATCGTCTACGACCCGACCA TCTTCGTCCGTGGCTCCATCGAAGCGGTGGTGCACACCCTGTTCGAAGCGCTGATCCTGGTGGTGCTGGTAGTGATCCTGTTCCTGCAGACCTGGCGCGC CTCGATCATCCCGCTGGTCGCGGTACCGGTGTCGCTGATCGGCACCTTCGCGGTGATGCACCTGTTCGGCTTCTCGCTCAACGCCCTGTCGCTGTTCGGC CTGGTGCTGGCCATCGGCATCGTGGTGGACGACGCCATCGTGGTGGTGGAGAACGTCGAACGTAACATCGGCCTGGGCCTGAACCCGGTGGAAGCCACCA AGCGCGCCATGCGTGAAGTGACCGGCCCGATCATCGCCACCGCCCTGGTGCTGTGCGCGGTGTTCGTACCGGCGGCCTTCATCAGCGGCCTGACCGGGCA GTTCTACAAGCAGTTCGCCCTGACCATTGCCATCTCCACGGTGATCTCGGCCTTCAACTCCCTGACCCTGTCGCCGGCCCTGGCCGCGGTATTGCTCAAG GAACACCATGCACCCAAGGACCGCTTCTCGAAGATCCTCGACACGCTGCTGGGGGGCTGGCTGTTCAAGCCGTTCAACCGCTTCTTCGATCGCGCCAGCC ATGGTTATGTCGGCACCGTGCGCCGGGTCATCCGCGGCAGCGGCATCGCCCTGTTCCTCTATGCAGGCCTGATGGTGCTGACCTGGTTCGGCTTCGCCCA CACCCCGACCGGTTTCGTCCCGGCCCAGGACAAGCAGTACCTGGTGGCCTTCGCCCAACTGCCGGACGCCGCCAGCCTGGACCGCACCGAAGACGTGATC AAGCGCATGTCCGACATCGCCCTCAAGCAACCGGGCGTGGAAAGCGCGGTGGCCTTCCCTGGCCTGTCGATCAACGGTTTCACCAACAGCCCGAACAACG GCATCGTCTTCGTCACCCTGAAACCCTTCGACGAACGCAAGGACCCGAGCATGTCCGCCGGGGCCATCGCCGGTGCCCTGAACGGCAAGTACGCGGATAT CCAGGACGCCTACATGGCGATCTTCCCACCGCCGCCGGTACAGGGCCTGGGAACCATCGGCGGCTTCCGCCTGCAAGTGGAGGACCGCAGCGGCCTGGGC TACGACGAGCTGTATAAAGAAGTGCAGAACGTCATCACCAAGAGCCGCAGCGTGCCGGAACTGGCCGGGCTGTTCACCAGCTACCAGGTCAACGTGCCCC AGGTCGATGCTGCCATCGACCGGGAAAAGGCCAAGACCCACGGCGTGGCGATCTCCGATATCTTCGACACCCTGCAGATCTACCTGGGTTCGCTGTATGC CAACGACTTCAACCGCTTTGGCCGCACCTACCAGGTCAACGTTCAGGCCGAGCAGCAGTTCCGTCTCGAACCCGAGCAGATCGGCCAGCTGAAAGTGCGC AACAACAAGGGCGAGATGATCCCCCTGGCGACCTTCATCAAGGTCAGCGACACCGCAGGCCCCGACCGCGTGATGCACTACAACGGTTTTGTCACCGCGG AAATCAACGGCGCAGCGGCCCCGGGCTACAGCTCCGGGCAGGCGGAAGCGGCGATCGAGAAACTGCTCAAGGAAGAACTGCCCAACGGCATGACCTACGA ATGGACCGAGCTGACCTACCAGCAGATCCTGGCTGGTAACACCGCGCTGTTCGTCTTCCCGCTCTGCGTACTGCTGGCCTTCCTGGTGCTGGCCGCGCAA TACGAGAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTGCCCATGACCCTGCTGTCGGCGATTACCGGGGTGATCGTCTCCGGGGGCGACAACAACA TCTTCACCCAGATCGGCCTGATCGTACTGGTGGGCCTGGCCTGCAAGAACGCGATCCTGATCGTCGAGTTCGCCAAGGACAAGCAAGAGGAAGGCCTCGA CCCGCTGGCCGCGGTGCTGGAAGCCTGCCGCCTGCGTCTGCGGCCGATCCTGATGACCTCCTTCGCCTTCATCATGGGTGTGGTGCCCCTGGTGATCTCC AGCGGCGCCGGTGCGGAAATGCGTCACGCCATGGGTGTCGCGGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCGGCCTGCTGCTGACCCCAGTGTTCT ATGTACTGATCCGCAACTATGTGGAGCGCAGCGAGGCGCGCAAGGCCGCCCGCGCTCTGCAACTGGAGGCGCAACAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTTCCAAAGTGTTCCTGCCGAGCCTGCTGGTGCTGGCCCTGAGCGCCTGCGCCGTGGGCCCGGACTACCAGACCCCGACCACCGAGGCGGCGCACATCAG CGCCGCCACCGATGGCGCCGCCGGGCAGAAGAACTTCGACCGCGCACGTTTCGAAGGCATCTGGTGGCAGCAGTTCGACGACCCGACCCTCAACCAGTTG GTAACCCAGTCGCTGCAGGGCAACCGTGAACTGCGGGTGGCCTTTGCCCGACTGCGGGCCGCCCGGGCGATTCGCGATGACGCCAGCAATGACGCCATGC CGACCATCACCAGCCGCGCCAGCAGCGACCTGGCCAAGGGGCAGATCCCCGGCCAGACCACCAAGCGGGTCAACAGCGAGCGCTACGACCTGGGCCTGGA CATGGCCTGGGAGCTGGACCTGTTCGGCCGCATCCAGCGCAACCTGGAAGCCACCGACGCCGACCAGCAGGCCGCCGAGGCCGACCTGTACCAGCTGCAG
Amino Acid Sequence
>transporter
MNFSQFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKITLTITFALGT DLDNAQVQVQNRVTRTQPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYALLNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTATDVVTAIREQNRQVAAGALGAPPAPTATSFQLSVNTQGRLVTEEEFENIIIRSGDDGEITRLKDIARIELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIEISNEVRAKMAELKKSFPQGMDFSIVYDPTIFVRGSIEAVVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIGLGLNPVEATKRAMREVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK EHHAPKDRFSKILDTLLGGWLFKPFNRFFDRASHGYVGTVRRVIRGSGIALFLYAGLMVLTWFGFAHTPTGFVPAQDKQYLVAFAQLPDAASLDRTEDVI KRMSDIALKQPGVESAVAFPGLSINGFTNSPNNGIVFVTLKPFDERKDPSMSAGAIAGALNGKYADIQDAYMAIFPPPPVQGLGTIGGFRLQVEDRSGLG YDELYKEVQNVITKSRSVPELAGLFTSYQVNVPQVDAAIDREKAKTHGVAISDIFDTLQIYLGSLYANDFNRFGRTYQVNVQAEQQFRLEPEQIGQLKVR NNKGEMIPLATFIKVSDTAGPDRVMHYNGFVTAEINGAAAPGYSSGQAEAAIEKLLKEELPNGMTYEWTELTYQQILAGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQEEGLDPLAAVLEACRLRLRPILMTSFAFIMGVVPLVIS SGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRNYVERSEARKAARALQLEAQQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site