Strain | Pseudomonas sp. PH1b Contig24, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TCGGTCAGGCCCTCTACCACCTGCAACAGCCGCTGCGGATCAGTGAATACCTCGGGCTGGCCATAGGCGTGCACGGCCACGTAGTTCCAGGTCGGTACCA CTTTTCCGTGTTCGGCCTTGCTCGGATAGAACGAGGGGCTGACATAGGCGTCCTCGCCCATGAAGATCACCAGTGCCTCGGCGCCACTGGCCAGTTCGGC ACATTGCGGATTGGCCTTGGCCAGATGCCCGTAGAGGGTGCCATTGGCCCCCTGTGCCGGGTCCAGCAACAGCGGCACATGGCTGGCCTGCAGACCCAGG GCGCCCCAGGTCACCAGGGTCGCCAGGCGGCTGTGCTGGATCACCCCGTGCAGGCGGGGCAGGTCTTCATCAACGAAAGCGCGAGGCAGATACATATAAA AAATCCTTGGCGAGTGGCTGCATCCTAGGCAGGCTAATGGTTCGTTGTAAGAGCCATCTATGATCTATTTCATGGGTCCAATCGCCCTGGGTGTACCCCG
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DNA Sequence for Gene |
>U873_RS0128765
ATGAACAGTGCCTTGCCTCCGCTGTCTTTCAACCCTGCCGGTATCGAACTGGATCGTCGCCAGGGCCTCAGCCGCCAGCTGTACCAGGCCTTGCGCCTGC GGGTGCTCGACGGTCGCCTGGCCAGTGGCACACGCCTGCCGGCCACTCGCGACCTGGCCGCCGCCCTGGGGATTTCCCGCAACAGCGTGGTGCGGGCCTA CGACCAGCTGTATGCCGAGGGGTTTATCGAGAGCCGGGTCGGTGATGGCACCTATGTGGCTCAACTGCCGGAAACCCGGTTGCCGCTGAAAAAACTATCC ACAAAAGTATCCACAGGGTTTTCAACAGGCTTACCCACAGGTTTATCCACAAAAAGCACGGATTTACCTGGGGTTACATCCAGTAAAGTTATCCACAGCA GTGGTGTGCAGCGGCTGCAGACGCACCATTTGAGTGCTCCGCCCAGTGGTCCACCGCGGGCTTTTCGGGTCGGCGTGCCGGCTTTCGATCTGTTTCCATT CGAGGTGTGGGCCAAGCTGAATGCGGCTTTCTGGCGCAGGCCGGACCTGCGTCAACTGTGTTACGGCGATTCGGCCGGCGATTCGCGCCTGCGCAGCCTG ATTGCCGCCTACCTGCGCAGCGCCCGGGGGCTGCACTGCACGGCTGAACAAATTGTGATCACCTGTGGTGCGCAGCAGGGCATCAGCCTTTGTGCACAGC TGCTGGTGGAGCCCGGCGACAGCGTGGCTGTGGAAAACCCCGGCTACCGCGCCGCCGGCCATGCCTTCGCCGTGGCCGGGGCGCGATTGCGGGGCGTGGC GGTGGATCAGGAGGGCATCGACTGCCGTCAGCTGGAGCAACTGGACAACTGCCGCCTGGCCTATGTCACACCGTCCCACCAGTACCCCACCGGGGTGATC ATGAGCCTGGCCCGGCGCCTGGAATTGCTGGCCTGGGCCGAGCGCAGCCAGGGCTGGATCGTCGAGGACGACTATGACGGCGAGTACCGCTACAGCGGCG CTCCGCTGGCGCCCCTGGCAGCCCTGGACCGCCAGGGGCGGGTGATCTACGTCGGCACCTTCGGCAAGGTGGCTTTTCCGGCGCTGCGCCTGGGCTACCT GGTGCTGCCGCCGAACCTGGTGCAGGCCTTTGCCCAGCGCCGGGCGGTGGATGTACGGCATTCGGAAGTCAGTACCCAGGCGGTGATGGCCGAATTCATG GCCGCCGGGCACTTCCAGCGGCATATCCGGCGCATGCGCAGGGCTGCCCTGAGCCGGCGCAATACCTTGCTGGAGGCCTGGCCGACGGTGATCGAGGGGG TAGGGCCGCTGCCCTCGGTGGCTGCCGGGCTGCACTTGACGCTGAAGGTCGACAGCCTGCAGCGAGAGCAGGAGTTGCTGGCCCAGGCCGCGAGTGTCGA TGTCGAAGTCAACGGCCTGAGCAGCTACTGGTTGCCGGACACGCCCTTGCCCGAAGACCGGCGGGCCGGGCTGGTGCTGGGGTTTGCCGCGGTGCCGGAG GCCGATATCCGCGCCGCCGTGAGCCGTTTGCGCCAGGCCTGGCGGGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCAGGTATACTCCCGGGCCTTCCCCTGCCCGAGACTCCTCATGAGCCAGACCCTTTCCATGGCGCCTGAACGCAAGTTCGGCGCCCCGTTGTTCGCCCTG TTGCTCCTGGTAGCCGGGGCCTTGTTCCTGCAAGCCCAGGTGGGCGCGCGGCAGGTGCTGCTGTTGCTGTTGGGGGCGGCCCTGGGATTGACCCTCTACC ACGCGGCCTTCGGCTTCACCTCGGCCTGGCGGGTGTTTATCCGCGACCGGCGCGGCGCTGGCCTGCGGGCGCAGATGGTCATGCTGGCCCTGGCGGTGCT GCTGTTCTTCCCGGCGCTGGGGGCGGGCAGCCTGTTCGGCCAGCCGGTGGTGGGCCTGGTGGCGCCGGCCGGGGTGTCGGTGATTTTCGGCGCCTTCATC TTCGGCATCGGCATGCAGCTGGGCGGCGGTTGCGCCTCGGGCACGCTGTTCACCGTTGGCGGCGGCAATGCGCGGATGCTGGTGACCCTGGGGTTCTTCA
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Amino Acid Sequence |
>GntR family transcriptional regulator
MNSALPPLSFNPAGIELDRRQGLSRQLYQALRLRVLDGRLASGTRLPATRDLAAALGISRNSVVRAYDQLYAEGFIESRVGDGTYVAQLPETRLPLKKLS TKVSTGFSTGLPTGLSTKSTDLPGVTSSKVIHSSGVQRLQTHHLSAPPSGPPRAFRVGVPAFDLFPFEVWAKLNAAFWRRPDLRQLCYGDSAGDSRLRSL IAAYLRSARGLHCTAEQIVITCGAQQGISLCAQLLVEPGDSVAVENPGYRAAGHAFAVAGARLRGVAVDQEGIDCRQLEQLDNCRLAYVTPSHQYPTGVI MSLARRLELLAWAERSQGWIVEDDYDGEYRYSGAPLAPLAALDRQGRVIYVGTFGKVAFPALRLGYLVLPPNLVQAFAQRRAVDVRHSEVSTQAVMAEFM AAGHFQRHIRRMRRAALSRRNTLLEAWPTVIEGVGPLPSVAAGLHLTLKVDSLQREQELLAQAASVDVEVNGLSSYWLPDTPLPEDRRAGLVLGFAAVPE ADIRAAVSRLRQAWRV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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