Pseudomonas sp. PH1b, U873_RS0127970
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PH1b Contig22, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCCAACGCGGCGACGAGGTGACAGTCGCCGTGCGCGAAGGCCGGGTGCGCCTGACCAGCGCCACCGGCGACAGCAGCCTGCTGCAAGCCGGGAATTGG CAACAACTGACGGACCGCCAGTTGCAACCCTTGCATCAGGACGGCGGCGAGCGCCAGATGGCCTGGACCAGCGGCCGCCTGTCGTTCCAGGACGCGCCCC TGGCCCAGGTGCTGGGCGAGCTGCGTCGCTACTACCCGGCGCCCATCCTGCTGCTCGATAACAACGCGGCCCGACAACGGGTCAGCGGCAACTACCAGGT GGATGATCCGCTGGCGATCGCCCAGGCCCTGAGCAAGGTGACACAGACCCGAATAACCCGGCTGCCGGGAGGCGTTCTGCTGGTTCGATAAGCGTCATGG GCTGCATTAAGGGCCCGAAAAATAGTTTTACGGCTTTGTCGCAGCCAACCCGTCAAGGTGTTTGCTTTTGCAAATAATTCCTATTCAGCACGGGGCTCGC
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| DNA Sequence for Gene |
>U873_RS0127970
ATGCACCTTTCAACCCACAACCCGCTTCCTTGCCGCAGCCTGCTGGCCCTGGCCATCTGCCTGGCGTGTACCCAGGCCCTGGCTGCCCAGCCCGCATCAG GCACTGCTTCCAGCCAGGTACAGAACACCCACAGTTTCAACATCGCCCGCCAGCCATTGGCCAATGCCCTGGATCAACTGAGCGTGCAGAGCGGCCTGCA GATCGCCTATTCGGCAGACCTGGCCCAGGGCCTGGAATCACCGGGGGTCAGTGGCCAGATGAGCGCCACCCAGGCCCTGGCCCGATTGCTCGCCGGAACC GCGCTGGGGTATGAGCCCAACGGCGCCAACGGGGTGATGCTGGTGCGCCAACCCCAGGCCGAGGGCTCGATGGACCTGGGGGCCTCGCAAATCATCAGTA ACCAGTTGGGCACCGTCACCGAAGGGTCCGGCTCCTACACCCCGGGCACCATCGCCACCGCTACCCGACTGGTCCTGAGCCCGCGGCAGACACCGCAGTC CATCACCGTGATCACCCGCCAGCACATGGAGGACTTCGGCCTGAACAACGTCGACGACGTCATGCGCCACACCCCGGGCATCACCGTGTCGGCCTACGAC ACCGACCGCACCAACTATTACGCTCGCGGTTTTTCGGTCAACAACTTCCAGTACGACGGCATCCCCTCCACCGTGCGCAACGTTGCCTATTCGGCAGGCA ACACCCTCAGCGACATGGCCATCTATGACCGGGTCGAGGTACTCAAGGGCGCCCCCGGCCTGCTCACCGGAGCCGGCTCCCTGGGAGCCACCATCAACCT GGTGCGCAAGAAGCCCACCGCCGACTTCCAGGGCCACGCCACCCTGGGCGTGGGCTCCTGGGACAACTACCGCAACGAACTGGATGTCAGCGGCCCGCTG ACCGAAACCGGCAATGTCCGCGGCCGGGCGGTGGCGGCCTACCAGGACAAGAAATCCTTTCTCGATCACTACTCACGCAAGACCTCGACCTACTACGGCA TCCTCGAATTCGACCTGTCCCCCGACACCCTGCTGACGGTGGGCGGTGACTATCAGGACAACATTCCCAAGGGTTCCAGCTGGTCGGGCACCTTCCCCTT GATCAACGCTCAGGGCGGCCATAACAGCATGTCGCGCTCCTATAACAACGGCACCACCTGGAGCGGCTGGGAACAATACACGCGCACCGCCTTCGCCATG CTCGAGCACGACCTGGGCGATGGCTGGGTCACCAAGCTGCAACTGGACCACAAGATCAACAGCTACCATGCCGAACTCGGCTCGATCCAGTTCGACGAGC CGCAGACCGACGGCACGGCCAAGATCAACGCGCAGAAGTACACCGGAGACACCACCAGCGATTCCGCCGACCTCTATGCCAGTGGACCTTTCAACCTGTT CGGCCGCGAGCATGAACTGGTGATCGGCGGCTCCATCGGCACCTCGCGCTGGACCGGCAAGGGCTACTGGAGCCCCGACTTTCCAGGGGCCAACGGCAAT GTGGTGGATTTCTACAACTGGAACGGCAAGATCGAGCGGCCGATCTGGGGCGCGCCAGCCCAACGCACCGACGACACGGTGCGCCAGACCGGCACCTACA TGACCACCCGACTGAACCTGACCGATGAACTAAAGCTGTTGCTGGGCGGGCGTGTGGTCAATTACCACCTGACCGGGCTAACACCGTCCTACAAGGAAAC CGGACGCTTCGTCCCCTACGTCGGCGCGACCTACGACCTGAACCACTACTTCACCGCGTACGCCAGCTACACCGATATCTTCATGCCCCAGGAAAGCTGG AACAAGGATCGCAACAGCAGGCTGCTGGAGCCGGACGAAGGACAGAACTACGAACTGGGCCTGAAGGGCGAATTCCTCGACGGGCGCCTGAACAGCAGCC TGGCCTACTTCGAAGTGCACGAGACCAACCGTTCGGTGCCCGACGACGCCTACAACAATCAGACCCCGACCCCGGACAACTATGCCTTCAAGGGCGCCAA GGCGGTGACCAAGGGTTACGAGCTGGAAGTGTCCGGCGAACTGAGCCCGGGCTGGCAGGTCCAGGCCGGCTATACCCACAAGATCGTGCGCGACGATGAC GGCCAGAAGATCTCCACCTTCGAGCCCGAGGACCAGGTCAACCTCTACACCAGCTACAAGCTCAAGGGCGAGCTGGACAAGCTGACCGTCGGCGGCGGTC TGCGCTGGCAAAGCCGGGGCTGGAACTCGCTCTACAACTCGCCCCTGCAGCGCAATGAGGAGATCTCCCAGGATGCCTACTGGCTGGTGGACCTGATGAC CCGCTACCAGATCAGCAAGAACCTCTCGGCCACCCTCAACGTCAACAATATCTTCGACAAGTCCTACTACACCAACGTCGGTTTCTATAACTCGGCGGCC TACGGTGAACCCCGCAACTTCATGCTCAGTACCCGCTGGGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCACTACGCCCCGGACGGCTTGTCCGGGGCACTGATCAGGCTCGCTCAGCCAACACCCGGGCAAACCTCCTCGACGAATTCTCGGCGCCAATCCCACAG GCACTGGCGCCGGCCCTCGTCATGTTGCATGAGGCACTTTCGCCGAGCGCCTCAGCCGAGCATTCCCGACTGTTCGAGCAAGTCCTGCAGCCCTTCGGGA ACCAGCGGCGACTGCGCGGTGAAGCTGCTGCTGTCATGCCAACTGGCGGTGAAGGGCGCGCCGTCGCTTTCCTGGGCATCGAGATGGGATCGCTGATAAA GGCTCGGGTCCTCGAACCGCGCGTCATACACCTGGACGATTTCATGGCAGGGTTTGCCGGCATAGACGAACAGGCTTTCCAGAGTGCCGATCAGCCGCAG TTGGTGGATAGGCAGCCCCAGCTCCTCGTGTATTTCCCGGACGATGGCCTGCTCGCTCCTTTCGCCAAAATCGATACCGCCGCCCAAGGGACGAAAGAAC
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| Amino Acid Sequence |
>ligand-gated channel
MHLSTHNPLPCRSLLALAICLACTQALAAQPASGTASSQVQNTHSFNIARQPLANALDQLSVQSGLQIAYSADLAQGLESPGVSGQMSATQALARLLAGT ALGYEPNGANGVMLVRQPQAEGSMDLGASQIISNQLGTVTEGSGSYTPGTIATATRLVLSPRQTPQSITVITRQHMEDFGLNNVDDVMRHTPGITVSAYD TDRTNYYARGFSVNNFQYDGIPSTVRNVAYSAGNTLSDMAIYDRVEVLKGAPGLLTGAGSLGATINLVRKKPTADFQGHATLGVGSWDNYRNELDVSGPL TETGNVRGRAVAAYQDKKSFLDHYSRKTSTYYGILEFDLSPDTLLTVGGDYQDNIPKGSSWSGTFPLINAQGGHNSMSRSYNNGTTWSGWEQYTRTAFAM LEHDLGDGWVTKLQLDHKINSYHAELGSIQFDEPQTDGTAKINAQKYTGDTTSDSADLYASGPFNLFGREHELVIGGSIGTSRWTGKGYWSPDFPGANGN VVDFYNWNGKIERPIWGAPAQRTDDTVRQTGTYMTTRLNLTDELKLLLGGRVVNYHLTGLTPSYKETGRFVPYVGATYDLNHYFTAYASYTDIFMPQESW NKDRNSRLLEPDEGQNYELGLKGEFLDGRLNSSLAYFEVHETNRSVPDDAYNNQTPTPDNYAFKGAKAVTKGYELEVSGELSPGWQVQAGYTHKIVRDDD GQKISTFEPEDQVNLYTSYKLKGELDKLTVGGGLRWQSRGWNSLYNSPLQRNEEISQDAYWLVDLMTRYQISKNLSATLNVNNIFDKSYYTNVGFYNSAA YGEPRNFMLSTRWDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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