Pseudomonas sp. PH1b, U873_RS0126100
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PH1b Contig20, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCTGCCGGCGATCAAGGACGGCGACAAGCGCATCCTGATGATCGACGGCGAGCCGGTGGATTACTGCCTGGCGCGCATCCCCGCGGCCGGTGAAACCCG CGGCAACCTCGCCGCCGGCGGCCGTGGCGAAGCCCGCCCGCTGAGCGACAAGGACCGCTGGATTGCTGCCCAGGTCGGCCCGACCCTGCGGGCCAAGGGC CTGCTGTTCGTCGGCCTCGACGTGATCGGCGAGCACCTGACGGAAATCAACGTCACCAGCCCGACCTGCATCCGCGAAATCGACAACGCCTTCGGCACCA ACATCGGCGCACAGCTGATGGATGCCATACAGAGCAAGCTGCAAGCCACAAGCAACAAGCCGCAAGCTTGATCTGTGTCACCTGCAGCTGGTCGCTTGCC GCTTGCTGCTGGAGGCTTGAAACCAACATTGCGTTATCATGCGCCGCCTGAGAAACCGTGATGTTGGTTGTGCAATGCCTCCAGTGATGTCGAACTGCCT
|
|
| DNA Sequence for Gene |
>U873_RS0126100
ATGAGCCTCCCGTCCGATCTGCCCCCCGAGCTTGCCCATGGCGGCGTGCGTGCGGCCGATCGCCTGGGGTTTACCCTGTTCCTCGCGGCGCTCCTGCACC TGGCACTGATTCTCGGCCTGGGCTTCTCCTTCGCCGAACCCAAGGCCATCAGCAAGACCCTGGAAATCACCCTGGCCACCTTCAAGAGCGAGACCAAGCC GAAGAAGGCCGATTTCCTCGCCCAGGACAACCAGGAGGGCAGCGGCACCCTGGACAAGAAAGCCCTGCCGAAGACCACCGAAGTGGCGCCCTTCCAGGAC AACTCGGTAAAAAAGGTCACGCCGCCACCATCGGTCAAGCCGCAGGTCAAGGAGGTCGCGCCCAAGGCCGCGGTCGCCACCACCGCGCCCAAGCCGAAAA AGACCGTGGTGCCCCGAGAAGAGGTCAAGAAAGAGCCCACCCCCAAGGCCGATACCCCGACGTTTGACAGCTCCCAGCTGTCCAGCGAGATTTCCAGCCT GGAAGCCGAACTGGCCAATGAACAGCAGCTGTACGCCAAGCGCCCACGGATCCACCGCCTGAGCGCGGCCTCGACCATGCGCGACAAGGGCGCCTGGTAC AAGGACGAATGGCGCAAGAAGGTCGAGCGCATCGGCAACCTGAACTACCCCGACGAAGCCCGGCGCAAGCAGATCTACGGCAACCTGCGGCTGATGGTCT CGATCAACCGCGACGGCTCGCTGTATGAAGTGCTGGTGCTGGAGTCCTCCGGGCAGCCGCTGCTGGACCAGGCGGCCCAGCGCATCGTGCGCCTGGCGGC ACCGTTTGCACCCTTTACCGGCGACCTGTCGGACATCGACCGCCTGGAAATCATCCGCACCTGGCGCTTCGCCCGGGGCGACAAGCTCTCCAGCAACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCGCCCTCCCGTAGGAGCCGGCTTGCCGGCGAAGGAGCCCGCAAGGCCTGTGCAACCTTCAATGACGCCTTCGCTGGCAAGCCAGCGCCTACAACACCC CCGCCCCCGTAGGAGCCGGCTTGCCGGCGAAGGAGCCCGCAAGGCCTGTGCAACCTTCAATGACGCCTTCGCTGGCAAGCCAGCTCCTACAACACCCCCC GCCCCCCGTAGGAGCCGGCTTGCCGGCGAAGGGGCCCGCAAGCCCTGTGCAACCTTCAATGACGCCTTCGCTGGCAAGCCAGCGCCTGCAACAGGGTTGC GCTTGTCAGCCGGCCCCGCCAACGCCACACTAGCGCTCATGAAAAATGTCAGCCCCAGCTACCTCAAGCATCACTTCCTGATCGCCATGCCCCATATGGC CGACCCGAATTTTGCGCAAACCTTGACCTACATCGTCGAGCACAACGCCAGTGGTGCCATGGGCCTGGTCATCAACCGGCCCCTGGACCTCAACCTCGCC
|
|
| Amino Acid Sequence |
>energy transducer TonB
MSLPSDLPPELAHGGVRAADRLGFTLFLAALLHLALILGLGFSFAEPKAISKTLEITLATFKSETKPKKADFLAQDNQEGSGTLDKKALPKTTEVAPFQD NSVKKVTPPPSVKPQVKEVAPKAAVATTAPKPKKTVVPREEVKKEPTPKADTPTFDSSQLSSEISSLEAELANEQQLYAKRPRIHRLSAASTMRDKGAWY KDEWRKKVERIGNLNYPDEARRKQIYGNLRLMVSINRDGSLYEVLVLESSGQPLLDQAAQRIVRLAAPFAPFTGDLSDIDRLEIIRTWRFARGDKLSSN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|